genome.fa.s2879.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: scaffold379
Parameters: 2 7 7 80 10 50 1000
Length:  674618

Tables:   1   2   3   

This is table  2  of  3  ( 269 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
298991--299042	22	2.2	24	83	10	63	76	1	11	9	1.09
300270--300611	100	3.4	100	92	0	567	34	20	18	26	1.95
300482--301764	95	13.4	95	90	2	1564	30	20	21	27	1.98
300957--301761	45	17.0	46	69	12	479	28	20	22	27	1.99
301387--301884	95	5.1	100	84	6	318	31	20	21	26	1.98
301680--301864	50	3.7	51	78	6	198	30	22	21	25	1.98
301671--301884	50	4.3	50	72	11	159	33	21	19	25	1.97
301936--301974	18	2.2	18	100	0	78	23	30	12	33	1.92
305691--305740	25	2.0	25	84	7	66	36	4	4	56	1.37
306369--306634	64	4.2	64	99	0	514	46	4	5	43	1.47
308769--308854	18	4.9	17	73	21	79	63	0	6	29	1.20
309400--309444	22	2.0	23	86	4	65	46	31	2	20	1.62
310401--310544	71	2.0	72	98	1	281	38	5	6	48	1.53
315603--316131	27	19.8	27	82	3	541	36	19	19	24	1.95
315630--316131	241	2.1	240	86	3	688	37	19	19	23	1.94
316288--316358	27	2.7	26	81	12	74	21	23	21	33	1.97
316354--316403	26	1.9	26	83	0	64	20	16	26	38	1.92
316394--316552	32	5.0	32	79	4	160	23	18	18	39	1.92
316396--316563	64	2.7	63	83	8	191	23	17	19	39	1.92
316558--316622	22	3.0	22	77	4	69	20	21	15	43	1.88
319415--319439	12	2.1	12	100	0	50	32	16	8	44	1.76
344286--344327	18	2.4	18	84	4	50	42	2	11	42	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
344679--344753	39	1.9	39	86	0	105	21	17	29	32	1.96
345957--345998	19	2.2	20	86	4	59	33	7	9	50	1.62
349303--349350	18	2.7	18	71	9	53	43	2	14	39	1.57
349802--349978	89	2.0	89	97	0	336	29	21	24	23	1.99
359617--359730	43	2.7	43	80	13	135	28	26	19	25	1.98
359659--359740	43	1.9	43	80	14	98	31	29	19	19	1.96
401034--401233	50	4.0	50	99	0	393	34	12	14	40	1.82
408218--409073	453	1.9	452	91	0	1390	28	10	21	39	1.86
410120--410174	17	3.1	17	77	15	58	41	18	3	36	1.68
411546--411580	10	3.4	10	84	7	52	34	8	25	31	1.86
411799--411832	16	2.0	17	88	11	52	23	0	29	47	1.52
412974--413029	29	1.9	29	85	7	78	46	0	0	53	1.00
413125--413170	20	2.4	19	78	7	56	58	2	0	39	1.10
431483--431584	27	3.8	27	88	0	141	37	19	18	24	1.94
431627--431746	21	5.7	21	86	8	156	38	10	13	38	1.78
431714--431756	22	1.9	23	85	4	61	34	9	13	41	1.77
438576--438623	15	3.3	15	88	8	64	68	0	16	14	1.21
438576--438617	7	5.7	7	83	10	57	69	0	16	14	1.20
440055--440239	44	4.2	44	65	12	110	30	22	21	25	1.99
439878--440707	132	6.3	132	92	0	1286	30	20	23	25	1.98
440308--440503	44	4.5	44	66	12	123	32	18	22	26	1.97
441251--441300	21	2.4	21	96	0	91	40	10	12	38	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
441292--441336	21	2.0	23	83	8	58	37	4	13	44	1.64
442146--442174	10	2.7	11	94	5	51	20	3	6	68	1.27
442983--443047	27	2.4	27	84	2	87	35	20	20	24	1.96
444693--444717	6	4.2	6	100	0	50	68	0	32	0	0.90
447647--447707	18	3.3	18	75	11	52	63	3	3	29	1.26
458573--458654	12	6.5	12	66	20	51	8	23	0	68	1.17
458521--458618	38	2.6	38	80	4	99	7	22	1	69	1.19
458572--458645	24	3.0	24	70	20	62	8	22	0	68	1.15
459537--459596	16	3.9	15	75	20	52	20	15	1	63	1.39
462451--462508	3	19.3	3	100	0	116	32	0	0	67	0.91
466779--466823	3	15.3	3	86	13	67	64	0	0	35	0.94
467261--467358	21	4.7	21	88	8	130	39	15	9	35	1.79
467751--468129	44	8.8	43	69	17	144	29	22	19	28	1.98
468746--469062	44	7.2	44	63	13	132	25	24	19	29	1.99
468696--469108	132	3.1	132	93	0	691	25	25	20	29	1.99
473548--473919	154	2.4	154	99	0	735	42	14	16	26	1.86
476534--476594	26	2.4	25	81	10	63	59	4	1	34	1.29
477299--477352	19	2.8	19	91	0	90	37	16	7	38	1.77
481122--481172	26	2.0	26	88	0	75	31	9	11	47	1.73
482469--482517	10	4.6	10	78	12	53	71	14	14	0	1.15
482469--482517	22	2.3	20	80	13	53	71	14	14	0	1.15
488396--488439	20	2.2	20	88	8	63	72	0	15	11	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
488397--488447	20	2.6	19	80	20	61	68	0	17	13	1.21
489890--490019	44	3.0	44	87	0	197	27	19	26	26	1.99
489893--490179	44	6.6	43	75	9	190	29	18	24	27	1.98
490689--490737	10	4.6	10	78	12	53	71	14	14	0	1.15
490689--490737	22	2.3	20	80	13	53	71	14	14	0	1.15
491592--491631	3	13.0	3	89	5	62	35	2	0	62	1.09
492473--492527	24	2.3	23	81	6	65	52	9	0	38	1.33
493741--493793	11	4.5	11	76	17	52	69	1	1	26	1.09
497617--497802	50	3.7	50	80	3	198	29	23	25	21	1.99
504105--504241	56	2.4	56	93	0	229	27	17	27	27	1.98
506710--507034	87	3.8	87	80	4	322	41	12	12	33	1.79
506963--507113	79	1.9	78	85	4	205	37	14	17	31	1.90
510203--510241	20	2.0	20	90	10	62	56	5	23	15	1.59
517338--517444	50	2.1	50	84	6	146	24	21	31	22	1.98
530613--530649	17	2.1	19	85	10	51	24	8	27	40	1.83
535627--535677	23	2.3	22	83	6	68	52	19	0	27	1.46
535627--535677	10	4.6	11	75	15	52	52	19	0	27	1.46
535862--536526	331	2.0	331	99	0	1321	29	16	26	26	1.97
540343--540368	6	4.3	6	100	0	52	30	0	19	50	1.48
542711--543463	44	17.3	43	68	3	288	21	23	24	30	1.99
542775--542983	87	2.4	87	90	0	328	20	24	25	30	1.99
542731--543465	43	17.0	42	69	10	363	21	23	23	30	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
542880--543516	174	3.7	172	83	4	676	22	24	23	29	1.99
542731--543206	217	2.2	218	88	0	711	21	23	23	31	1.98
542950--543517	87	6.5	87	89	0	841	22	24	23	29	1.99
545810--545835	6	4.3	6	100	0	52	30	0	19	50	1.48
548417--548643	44	5.2	44	63	14	146	25	22	22	29	1.99
548461--548686	43	5.2	43	63	14	140	24	19	24	30	1.98
548407--548741	87	3.9	87	97	0	627	23	21	23	30	1.99
550471--550543	36	2.0	35	82	10	85	60	2	8	28	1.40
552985--553509	82	6.5	82	81	5	443	29	13	11	45	1.79
552976--553417	162	2.7	165	80	5	465	29	13	11	44	1.79
553201--553529	159	2.1	153	80	5	363	30	12	11	45	1.77
553282--553529	77	3.2	77	83	2	293	30	11	10	47	1.74
556995--557170	79	2.2	78	86	7	257	34	16	13	35	1.88
557198--557446	86	2.9	86	80	7	233	35	11	10	42	1.76
557225--557471	83	2.9	83	79	7	223	34	12	9	42	1.76
563600--563798	100	2.0	100	91	2	319	35	26	10	27	1.89
572638--572695	22	2.7	21	84	7	80	32	5	18	43	1.73
573096--573151	9	7.0	8	82	8	53	51	33	0	14	1.42
573766--573797	2	16.0	2	100	0	64	50	0	0	50	1.00
576528--576630	26	3.8	27	73	10	77	48	0	7	42	1.38
576554--576607	26	2.1	26	89	0	81	48	0	9	42	1.35
576846--576893	4	12.0	4	80	8	53	70	2	4	22	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
578670--579093	44	9.8	44	72	5	224	26	20	22	30	1.98
578811--579006	85	2.3	85	80	8	209	26	20	21	31	1.98
578666--579110	128	3.4	129	84	2	527	25	20	21	31	1.98
580847--580876	12	2.4	13	88	11	53	46	6	23	23	1.75
583792--583845	26	2.1	26	85	0	72	48	1	9	40	1.46
594083--594360	79	3.3	86	74	13	222	33	14	13	38	1.86
595713--595864	25	6.2	25	76	12	118	26	21	19	32	1.97
595723--595875	49	3.1	49	87	2	191	27	22	18	31	1.97
595752--595875	50	2.5	49	89	3	178	27	24	19	29	1.98
595743--595870	25	5.2	25	76	14	122	25	23	20	30	1.98

Tables:   1   2   3