Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: scaffold379
Parameters: 2 7 7 80 10 50 1000
Length:  674618

Tables:   1   2   3   

This is table  3  of  3  ( 269 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
598788--599487
350
2.0
346
94
1
1231
34
19
13
32
1.91
605661--605699
20
2.0
20
90
10
62
15
23
5
56
1.59
610133--610161
15
1.9
15
100
0
58
34
17
13
34
1.89
613313--613343
3
10.3
3
100
0
62
67
0
0
32
0.91
616119--616158
20
1.9
22
85
10
57
35
10
5
50
1.58
619722--619765
22
2.0
22
95
0
79
25
36
4
34
1.76
625141--625184
18
2.5
17
75
10
52
75
2
4
18
1.09
632619--632761
57
2.4
57
83
9
162
30
20
25
23
1.98
632653--632761
57
1.9
57
88
3
166
30
19
26
23
1.98
636484--636549
33
2.0
33
96
0
123
28
15
3
53
1.57
640804--640834
11
2.8
11
100
0
62
29
25
0
45
1.54
642602--642644
18
2.4
18
92
0
68
20
27
9
41
1.83
642885--642925
21
2.0
21
95
0
73
31
53
14
0
1.41
643055--643110
25
2.3
24
76
11
60
41
0
5
53
1.24
646544--646581
19
2.0
20
85
15
53
31
5
21
42
1.75
650061--650102
12
3.6
12
83
6
59
35
0
0
64
0.94
650061--650102
11
3.5
12
83
9
59
35
0
0
64
0.94
650668--650728
26
2.4
26
73
13
72
59
19
11
9
1.60
653023--653090
2
34.0
2
87
0
100
0
5
50
44
1.26
653023--653094
18
4.0
18
90
0
117
0
6
50
43
1.29
661150--661215
29
2.3
29
89
7
100
46
10
13
28
1.76
661169--661215
16
3.2
15
77
22
55
44
12
14
27
1.82
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
661093--661188
22
4.3
22
88
4
122
48
11
12
27
1.75
662418--662636
108
2.0
109
99
0
431
51
13
22
11
1.74
666601--666648
4
12.0
4
81
0
51
22
4
4
68
1.24
666759--666786
2
14.0
2
100
0
56
50
0
0
50
1.00
668784--668808
9
2.8
9
100
0
50
68
8
0
24
1.16
671034--671333
44
6.8
43
63
15
105
29
24
17
29
1.97
670972--671543
132
4.3
132
93
0
948
29
23
17
28
1.97

Tables:   1   2   3

The End!