Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: scaffold305
Parameters: 2 7 7 80 10 50 1000
Length:  679795

Tables:   1   2   3   

This is table  3  of  3  ( 273 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
599765--599801
9
4.1
9
92
0
65
29
10
13
45
1.77
599855--599885
9
3.4
9
90
0
53
38
22
12
25
1.90
608160--608269
54
2.0
54
92
3
186
40
12
18
28
1.87
610447--610516
25
2.8
25
80
2
86
28
27
15
28
1.96
612375--612520
75
1.9
76
87
1
213
28
19
15
36
1.92
612605--612710
54
2.0
54
90
3
169
39
13
17
29
1.88
614745--614936
24
7.9
24
69
16
101
19
25
19
35
1.95
614745--614861
49
2.4
46
77
17
112
17
26
20
35
1.95
614747--614941
73
2.7
72
79
8
182
19
25
20
35
1.96
614894--614975
25
3.3
25
76
8
69
21
25
21
30
1.99
621133--621186
27
2.0
27
96
0
99
35
14
11
38
1.82
622216--622405
94
2.0
94
98
0
371
34
17
18
28
1.94
625799--625904
19
5.7
18
69
21
60
51
6
0
40
1.34
633528--633570
2
21.5
2
90
0
68
53
44
2
0
1.13
636821--636870
20
2.6
19
87
12
68
50
12
0
38
1.40
636842--636876
15
2.2
16
90
5
54
45
17
0
37
1.48
638442--638492
26
2.0
26
96
0
93
33
9
19
37
1.85
639205--639263
26
2.3
26
81
0
73
40
5
18
35
1.73
640673--640757
42
2.0
42
93
0
143
30
11
25
31
1.92
650193--650227
4
8.8
4
100
0
70
51
22
0
25
1.48
656796--656846
18
2.8
18
75
19
52
66
0
5
27
1.14
656796--656891
46
2.1
47
81
13
110
64
0
7
28
1.20
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
657002--657076
29
2.6
29
85
8
100
60
0
2
37
1.11
657477--657542
10
6.3
11
73
16
52
34
1
3
60
1.21
657407--657520
30
3.8
32
69
24
86
28
2
5
63
1.30
657497--657542
21
2.2
20
88
7
65
32
2
2
63
1.19
658222--658284
19
3.4
17
82
12
63
53
4
1
39
1.31
658221--658282
20
3.2
19
84
6
72
56
4
1
37
1.30
658242--658284
19
2.3
19
92
4
70
55
4
0
39
1.20
658303--658337
10
3.5
10
96
0
61
62
11
0
25
1.28
665652--665677
2
13.0
2
100
0
52
0
50
0
50
1.00
677000--677105
54
2.0
54
88
1
160
26
13
11
49
1.75
678335--678410
27
2.8
27
91
0
125
14
25
19
40
1.89

Tables:   1   2   3

The End!