genome.fa.s2896.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: scaffold305
Parameters: 2 7 7 80 10 50 1000
Length:  679795

Tables:   1   2   3   

This is table  2  of  3  ( 273 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
298261--298307	22	2.1	23	88	4	69	6	17	0	76	0.98
298752--298786	14	2.5	13	86	13	52	34	0	14	51	1.42
299222--299425	45	4.5	45	79	0	174	29	16	14	39	1.89
299317--299348	14	2.2	15	94	5	57	34	6	12	46	1.67
299253--299425	90	1.9	90	79	2	195	31	13	13	40	1.84
316604--316861	33	7.6	33	65	25	110	17	19	28	34	1.95
316600--316906	102	3.0	102	90	0	488	18	19	28	32	1.96
316613--316906	103	2.9	102	89	1	462	19	20	27	32	1.96
319833--320010	92	1.9	92	94	0	311	37	5	15	42	1.70
330019--330053	14	2.5	14	95	0	61	54	0	14	31	1.40
330669--330696	14	2.0	14	100	0	56	21	0	14	64	1.29
331081--331113	17	1.9	17	88	11	50	42	3	0	54	1.15
337903--338369	154	3.0	154	94	0	808	30	9	15	43	1.80
339338--339505	85	2.0	85	84	2	221	27	26	18	26	1.98
339338--339506	43	4.0	43	84	1	214	27	27	18	26	1.98
339701--339741	21	2.0	21	85	9	57	36	41	2	19	1.65
339738--339785	7	6.7	7	80	4	51	47	31	0	20	1.50
339738--339785	15	3.3	15	80	8	55	47	31	0	20	1.50
339738--339785	22	2.2	21	85	3	69	47	31	0	20	1.50
339810--339854	14	3.2	14	78	12	56	48	24	0	26	1.51
340150--340449	112	2.6	113	82	4	372	29	21	17	31	1.96
341988--342024	15	2.5	15	83	16	58	27	0	5	67	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
342040--342100	20	3.2	20	77	6	65	31	1	6	60	1.32
343391--343467	37	2.1	37	100	0	154	35	18	2	44	1.63
352801--352970	42	4.0	42	100	0	340	21	4	28	44	1.72
354403--354431	14	2.1	14	100	0	58	86	6	6	0	0.72
354538--354573	17	2.1	17	89	5	54	5	16	13	63	1.47
359365--359425	7	9.3	7	89	7	85	75	13	1	9	1.12
359366--359440	6	11.8	6	81	4	51	70	12	5	12	1.31
361840--362037	44	4.6	43	74	9	161	31	18	19	30	1.96
361650--362521	233	3.7	233	90	0	1352	33	17	20	28	1.95
362090--362195	44	2.4	44	81	7	117	31	16	24	28	1.96
362306--362473	44	3.8	44	80	7	182	32	14	20	31	1.93
362306--362473	88	1.9	88	82	4	214	32	14	20	31	1.93
362526--363180	100	6.6	100	87	1	927	30	22	22	24	1.99
362530--363180	299	2.2	300	87	1	948	30	22	22	24	1.99
362555--363134	50	11.6	50	70	4	398	31	23	21	24	1.99
363180--363686	50	10.1	50	70	5	301	34	22	19	23	1.96
363021--363355	175	1.9	175	85	0	463	31	22	22	23	1.99
363180--363686	100	5.1	100	85	3	583	34	22	19	23	1.96
362921--363455	275	1.9	275	82	2	671	31	22	22	23	1.99
363197--363686	200	2.4	198	86	3	660	34	22	19	23	1.97
364901--364965	30	2.2	30	81	10	71	18	4	6	70	1.26
376193--376223	16	1.9	16	100	0	62	48	25	6	19	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
378820--378951	50	2.6	50	80	4	149	28	21	27	21	1.99
380002--380028	14	1.9	14	100	0	54	51	7	0	40	1.30
380233--380370	40	3.5	40	84	5	181	37	22	22	17	1.94
380405--381366	41	23.5	41	88	0	1438	19	20	30	28	1.98
380408--381366	123	7.8	123	99	0	1864	20	21	30	28	1.98
383312--383351	21	1.9	21	85	10	55	7	42	2	47	1.45
385897--386010	43	2.7	42	77	1	120	28	16	25	29	1.97
386011--386211	43	4.7	43	89	0	276	21	19	31	27	1.98
386011--386238	86	2.6	86	86	4	278	21	20	30	28	1.98
396214--396557	40	8.3	41	76	11	285	29	23	22	24	1.99
396214--396557	80	4.1	82	75	14	314	29	23	22	24	1.99
396278--396517	133	1.8	133	85	3	340	27	22	23	25	2.00
396236--396697	173	2.6	175	84	7	580	29	22	22	25	1.99
396448--396702	140	1.8	141	86	5	374	31	20	22	25	1.98
396589--396695	40	2.7	39	84	9	128	30	20	22	26	1.98
400777--401084	43	7.2	43	87	2	458	19	17	33	28	1.95
401180--401222	22	2.0	22	95	0	77	41	27	20	9	1.83
405969--405998	15	2.0	15	93	0	51	66	16	0	16	1.25
405996--406026	14	2.2	14	94	0	53	64	9	6	19	1.45
406948--406991	16	2.8	15	86	6	52	45	4	4	45	1.44
406950--407134	92	2.0	93	98	1	363	34	12	8	44	1.74
411144--411631	122	4.0	122	98	0	949	42	18	15	23	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
413524--413564	21	2.0	21	100	0	82	21	24	14	39	1.91
419430--419463	16	2.2	15	89	5	50	44	0	0	55	0.99
435518--435544	14	1.9	14	100	0	54	29	11	7	51	1.64
442641--442708	34	2.0	34	100	0	136	32	11	17	38	1.86
459178--459217	10	3.9	10	90	3	62	47	22	0	30	1.52
462951--463017	32	2.2	30	81	10	73	38	10	0	50	1.37
469888--469975	28	3.1	28	83	0	113	29	26	22	21	1.99
470081--470157	26	3.0	26	74	0	82	40	20	22	16	1.91
470338--471264	27	34.3	27	98	0	1800	15	21	22	41	1.90
481130--481246	60	2.0	60	84	3	155	42	14	8	34	1.76
483514--483550	15	2.4	16	82	13	51	37	24	2	35	1.70
487682--487753	35	2.1	35	87	10	103	45	0	2	51	1.15
487682--487760	18	4.3	20	78	13	66	44	0	3	51	1.19
501705--501761	25	2.4	24	82	8	64	38	7	12	42	1.70
501743--501773	12	2.6	12	100	0	62	35	6	19	38	1.77
503206--503231	12	2.2	12	100	0	52	61	0	7	30	1.24
503127--503273	79	1.9	78	80	4	170	63	2	5	27	1.30
503854--503884	9	3.4	9	90	0	53	41	22	9	25	1.84
503892--503952	17	3.4	17	68	12	50	50	13	3	32	1.57
503883--503957	37	2.0	37	97	0	141	45	14	5	34	1.68
503883--503974	37	2.5	37	89	7	125	46	14	5	33	1.67
504935--504992	9	6.4	9	85	0	80	37	24	12	25	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
504935--504992	18	3.2	18	90	0	89	37	24	12	25	1.90
505094--505137	18	2.4	18	88	0	61	13	2	43	40	1.57
506696--506748	27	1.9	28	88	3	81	50	1	0	47	1.12
508442--508555	58	2.0	58	94	0	201	30	15	9	43	1.79
509241--509279	17	2.2	18	90	4	62	33	15	2	48	1.58
515716--515847	43	3.1	42	79	10	137	31	28	18	21	1.97
515716--515828	41	2.7	42	84	5	140	30	29	17	23	1.97
521338--521379	17	2.5	17	84	3	59	66	0	0	33	0.92
523847--523894	23	2.0	23	84	4	60	25	20	12	41	1.87
524942--524991	14	3.5	15	78	18	61	28	0	4	68	1.08
524953--524996	13	3.3	13	84	6	61	27	0	4	68	1.09
524933--524996	27	2.4	27	86	2	94	32	0	3	64	1.10
524941--524985	14	3.3	14	84	6	65	28	0	4	66	1.11
525112--525156	7	6.1	7	82	17	56	57	0	0	42	0.98
525112--525156	22	2.0	22	87	8	65	57	0	0	42	0.98
525113--525159	14	3.1	15	85	14	62	59	0	0	40	0.97
525124--525160	16	2.4	17	82	17	53	59	0	0	40	0.97
525759--525783	13	1.9	13	100	0	50	16	0	4	80	0.87
530512--530657	57	2.5	59	84	9	192	29	22	26	21	1.99
530782--530910	67	1.9	67	92	3	215	22	17	31	27	1.97
538268--538308	19	2.2	19	86	0	55	51	4	4	39	1.45
538320--538361	10	4.3	10	75	6	50	42	2	0	54	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
538333--538374	17	2.4	17	80	11	50	35	4	0	59	1.19
538369--538409	17	2.5	16	92	4	64	19	7	2	70	1.22
538845--538906	30	2.0	31	81	9	74	30	3	1	64	1.19
546535--546594	22	2.6	23	81	10	77	38	18	26	16	1.92
546538--546616	25	3.3	24	79	11	83	37	18	25	17	1.93
547565--547603	5	8.2	5	83	11	55	58	0	2	38	1.12
547565--547609	23	2.0	23	82	8	56	60	0	2	37	1.09
559111--559616	144	3.6	137	81	8	538	32	18	22	26	1.97
593209--593239	2	15.5	2	93	0	53	51	0	0	48	1.00
595011--595049	7	5.6	7	100	0	78	28	0	12	58	1.34

Tables:   1   2   3