genome.fa.s2969.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: scaffold325
Parameters: 2 7 7 80 10 50 1000
Length:  982141

Tables:   1   2   3   

This is table  2  of  3  ( 327 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
279538--279733	32	6.1	32	86	2	250	22	16	20	39	1.92
279529--279733	64	3.2	64	87	2	277	22	16	20	40	1.92
279886--279963	28	2.8	28	96	0	138	20	24	26	28	1.99
282241--282326	40	2.1	40	95	2	154	40	18	12	27	1.87
286276--286362	45	1.9	45	92	0	147	27	16	21	34	1.95
295233--295624	27	14.5	28	77	9	309	44	18	17	19	1.87
295291--295624	27	12.4	27	81	4	334	44	18	17	18	1.87
295855--295935	26	3.1	26	77	7	92	22	19	20	37	1.95
296075--296187	56	2.0	55	89	5	174	25	23	23	28	1.99
296076--296182	28	3.8	28	87	2	144	26	23	22	28	1.99
296150--296215	33	2.0	33	81	0	78	28	22	24	24	1.99
295997--296451	227	2.0	227	92	0	759	23	20	26	29	1.99
296268--296399	56	2.4	56	86	7	187	24	21	23	30	1.99
296268--296414	28	5.3	28	83	4	165	24	22	22	30	1.99
299298--299364	33	2.0	33	100	0	134	43	11	23	20	1.85
300822--300894	27	2.7	27	89	0	110	45	21	12	20	1.84
301947--302006	20	3.2	18	81	11	52	16	20	41	21	1.90
301973--302007	17	2.0	17	88	5	52	11	20	42	25	1.85
302295--302546	27	9.3	27	79	3	249	44	20	15	19	1.87
302785--302859	26	2.9	26	80	6	98	20	18	24	37	1.94
302973--303105	28	4.8	28	88	1	169	24	21	23	30	1.99
302961--303105	56	2.6	56	84	6	204	24	22	22	30	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
302961--303111	28	5.4	27	82	7	151	24	21	22	31	1.99
304499--304537	12	3.2	12	85	0	51	10	15	10	64	1.50
306340--306407	31	2.2	31	100	0	136	32	13	30	23	1.93
307291--307321	9	3.4	9	90	0	53	38	22	12	25	1.90
333154--333219	20	3.3	20	68	14	55	13	33	19	33	1.91
333136--333302	41	4.0	41	85	3	219	18	29	17	34	1.94
340768--340809	22	2.0	22	86	13	61	26	16	33	23	1.96
351916--352203	27	10.6	27	82	0	297	37	20	17	23	1.94
352208--352278	23	3.0	23	79	2	79	18	5	28	47	1.71
352466--352668	32	6.4	32	82	2	230	21	19	18	40	1.91
353915--353967	14	3.8	13	79	18	54	54	1	0	43	1.11
354085--354109	9	2.8	9	100	0	50	36	0	8	56	1.29
357053--357092	20	2.0	20	100	0	80	35	5	35	25	1.78
386905--386961	26	2.2	26	87	0	78	33	17	17	31	1.93
389185--389226	20	2.1	20	86	0	57	47	0	7	45	1.30
394263--394304	20	2.1	20	86	0	57	47	0	7	45	1.30
400934--401074	27	5.3	26	83	5	167	46	19	16	17	1.85
400933--401074	54	2.7	53	83	4	196	46	19	16	17	1.84
403843--403912	36	1.9	36	91	5	115	41	18	18	21	1.91
403983--404010	14	2.0	14	100	0	56	50	14	7	28	1.69
406173--406313	57	2.4	59	81	11	164	27	21	24	25	2.00
406440--406566	67	1.9	67	93	0	218	20	18	32	29	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
414691--414730	14	2.7	15	84	7	55	55	5	0	40	1.22
417083--417165	3	30.0	3	68	16	54	3	27	1	67	1.15
417086--417137	16	3.1	18	81	18	67	3	28	0	67	1.08
417078--417165	43	2.0	44	84	6	117	3	27	1	68	1.13
417080--417148	11	6.4	11	75	9	61	4	28	0	66	1.10
417445--417502	29	2.0	29	86	0	80	31	34	1	32	1.68
422765--422794	3	10.0	3	92	0	51	3	66	0	30	1.07
422768--422799	15	2.1	15	94	0	55	6	65	3	25	1.31
424029--424076	13	3.7	13	82	0	60	35	2	22	39	1.66
424453--424487	9	3.8	9	85	7	52	25	40	0	34	1.56
441487--441514	11	2.5	11	100	0	56	32	0	0	67	0.91
443515--443554	21	1.9	21	90	10	64	27	5	17	50	1.67
447829--447884	20	2.8	20	86	0	67	46	0	32	21	1.52
448945--448983	20	2.0	19	85	5	51	28	25	2	43	1.68
454390--454549	45	3.6	43	79	5	178	26	19	12	41	1.87
462201--462261	29	2.1	31	87	9	92	45	6	14	32	1.71
462508--462613	29	3.4	32	75	9	119	28	8	3	59	1.44
462652--462676	12	2.1	12	100	0	50	16	0	0	84	0.63
463295--463321	14	1.9	14	100	0	54	0	25	0	74	0.83
466356--466381	9	2.9	9	100	0	52	11	23	7	57	1.59
469943--470000	28	2.1	28	96	0	107	24	8	22	44	1.80
474711--474913	45	4.5	45	80	4	187	27	14	22	35	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
474710--474913	90	2.3	90	80	2	223	27	14	22	35	1.93
480437--480499	5	12.6	5	100	0	126	60	0	0	39	0.97
489273--489618	50	6.9	50	78	7	297	30	26	17	26	1.97
489268--489618	101	3.5	99	81	7	370	29	26	16	27	1.97
495083--495536	134	3.4	135	79	4	452	38	14	15	31	1.87
495359--495741	206	1.9	206	83	1	507	40	15	14	29	1.87
495561--495933	133	2.8	133	84	1	469	40	14	14	29	1.86
497653--497699	24	2.0	24	100	0	94	25	25	12	36	1.92
511290--511615	163	2.0	162	87	3	467	31	11	18	38	1.87
516080--516107	11	2.5	11	100	0	56	21	0	53	25	1.46
516547--516580	15	2.3	15	89	0	50	58	8	0	32	1.29
519421--519497	26	3.0	26	86	0	109	18	24	22	35	1.96
525629--525709	26	3.1	26	81	0	108	19	18	22	39	1.92
530204--530234	4	8.0	4	92	7	55	51	0	0	48	1.00
533423--533550	63	2.0	63	98	0	247	43	21	6	28	1.76
536301--536361	32	1.9	32	89	0	95	49	4	19	26	1.69
543389--543474	44	2.0	44	90	0	136	29	36	5	29	1.81
555620--555704	25	3.5	24	83	6	91	28	21	24	25	1.99
558617--558648	15	2.1	16	94	5	57	56	0	6	37	1.25
558624--558660	11	3.5	11	82	14	51	51	0	8	40	1.32
558623--558660	20	1.9	20	94	0	67	52	0	7	39	1.31
559761--559830	28	2.4	29	83	6	90	35	12	21	30	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
560775--560878	51	2.0	51	87	3	147	32	11	21	34	1.89
566638--566685	24	2.0	24	87	0	69	20	50	6	22	1.71
579590--579620	10	3.1	10	95	0	53	54	0	0	45	0.99
593077--593182	51	2.1	51	100	0	212	22	5	23	48	1.72
597409--597439	12	2.6	12	89	0	53	12	25	35	25	1.92
598623--598696	25	3.0	25	78	7	87	28	22	20	28	1.99
607543--607633	28	3.3	28	77	11	91	31	3	5	59	1.36
608501--609358	44	19.8	44	70	9	404	27	25	18	28	1.98
608646--609350	89	8.1	85	70	11	293	28	26	18	27	1.98
608681--609357	218	3.1	218	93	0	1113	28	26	18	27	1.98
608458--609010	174	3.2	173	81	6	681	27	25	18	27	1.98
608717--609268	89	6.3	86	71	11	297	27	26	19	26	1.99
610630--610665	13	2.8	13	91	4	56	13	13	2	69	1.30
616187--616244	28	2.1	27	83	3	71	63	5	5	25	1.36
618357--618388	11	2.9	11	95	0	55	40	0	31	28	1.57
621767--621798	11	2.9	11	95	0	55	40	0	31	28	1.57
627773--627979	104	2.0	101	80	10	228	31	13	19	34	1.91
628149--628312	80	2.0	80	92	0	274	27	25	15	31	1.96
629592--629800	103	2.0	103	87	1	303	28	1	15	54	1.50
629473--629882	218	1.9	221	85	4	569	26	1	16	55	1.51
631599--631654	22	2.5	23	82	5	69	35	5	16	42	1.70
631988--632162	37	4.7	37	84	3	208	36	16	16	31	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
636061--636097	17	2.1	19	85	10	51	27	0	18	54	1.44
649353--649382	16	1.9	16	93	6	53	50	20	0	30	1.49
666662--666707	3	15.3	3	95	0	83	67	0	0	32	0.91
666706--666751	3	15.3	3	100	0	92	34	0	0	65	0.93
670729--670774	23	2.0	23	100	0	92	30	13	17	39	1.87
681449--681478	15	1.9	16	93	6	53	66	0	20	13	1.24
681528--681594	33	1.9	33	82	8	80	47	8	31	11	1.71
688115--688148	13	2.6	13	85	0	50	14	29	38	17	1.90
692998--693055	27	2.1	27	96	0	107	31	20	27	20	1.98
703488--703565	29	2.6	29	83	4	93	47	14	14	24	1.80

Tables:   1   2   3