genome.fa.s2969.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: scaffold325
Parameters: 2 7 7 80 10 50 1000
Length:  982141

Tables:   1   2   3   

This is table  3  of  3  ( 327 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
703513--703586	29	2.5	29	86	4	94	50	16	13	20	1.78
712662--712841	89	2.0	90	98	1	353	44	4	5	45	1.47
721885--721980	42	2.3	42	92	0	165	51	12	6	30	1.64
725582--725631	19	2.9	17	73	23	50	32	4	0	64	1.12
725582--725633	18	2.9	17	77	8	59	30	3	0	65	1.10
726950--726984	17	1.9	17	88	11	52	62	0	11	25	1.28
729755--729875	60	2.0	61	98	1	235	42	11	11	34	1.78
730112--730980	86	10.1	86	99	0	1731	40	4	8	46	1.54
737970--738079	45	2.6	44	80	8	122	31	28	4	35	1.77
738058--738127	16	4.4	16	94	0	104	34	34	0	31	1.58
739805--739842	20	1.9	20	100	0	76	44	10	2	42	1.52
741468--741498	15	2.1	15	93	0	53	67	9	6	16	1.39
745189--745240	24	2.1	24	82	7	59	46	0	3	50	1.20
758017--758073	28	2.0	28	90	6	89	56	0	5	38	1.22
762119--762143	2	12.5	2	100	0	50	48	0	0	52	1.00
762764--762899	41	3.3	41	93	0	227	30	18	20	30	1.96
762764--762949	82	2.3	82	82	3	214	29	19	22	29	1.98
766562--766672	58	1.9	59	83	1	143	38	22	16	22	1.92
766562--766648	29	3.0	29	81	0	93	41	21	13	22	1.89
773555--773597	16	2.8	16	85	3	52	62	4	0	32	1.15
775185--775225	13	3.2	13	86	3	57	70	2	19	7	1.22
786739--786778	17	2.4	17	83	4	55	20	10	2	67	1.31
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
793295--793391	44	2.2	44	83	3	115	35	18	17	28	1.94
793433--793602	44	3.7	44	86	7	216	31	21	21	26	1.98
793563--793667	55	1.9	55	88	0	156	38	20	16	24	1.93
793896--793929	14	2.3	15	90	5	52	76	2	0	20	0.92
795971--796011	20	2.0	20	95	0	73	34	24	12	29	1.91
803011--803051	2	20.5	2	94	0	73	48	0	2	48	1.14
815697--815759	31	2.0	31	96	0	117	36	7	9	46	1.66
818185--818333	56	2.7	56	89	0	217	46	16	6	31	1.71
821859--821932	33	2.2	33	85	0	103	44	14	9	31	1.77
822561--822617	25	2.3	25	90	0	87	15	19	31	33	1.93
822903--822983	31	2.7	30	85	9	103	24	11	8	55	1.63
823671--823708	10	3.9	10	89	3	51	63	0	5	31	1.17
823961--823993	2	16.5	2	100	0	66	48	0	0	51	1.00
824485--824529	17	2.8	17	80	12	51	28	0	4	66	1.11
831484--831601	51	2.3	51	84	7	150	27	18	5	47	1.72
833701--833894	62	3.0	68	71	19	176	41	4	5	48	1.46
841134--841182	9	5.4	9	78	9	55	44	20	8	26	1.79
841222--841250	6	4.8	6	100	0	58	17	0	17	65	1.27
841291--841334	18	2.4	18	88	0	61	13	2	43	40	1.57
844156--844195	19	2.0	20	85	4	55	35	12	7	45	1.70
846989--847028	20	2.0	21	85	14	57	47	0	2	50	1.14
847010--847041	16	2.0	16	93	0	55	65	0	0	34	0.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
853878--853934	28	2.1	27	83	3	69	49	7	5	38	1.53
855122--855217	46	2.1	46	92	0	156	42	21	7	28	1.79
855133--855207	24	3.2	24	69	27	70	42	22	6	28	1.78
856301--856382	32	2.5	33	86	5	114	52	18	1	28	1.53
861761--861803	18	2.4	18	88	0	59	46	0	4	48	1.22
861879--861925	19	2.4	20	85	7	78	48	12	10	27	1.74
869452--869485	17	2.0	17	94	0	59	11	20	29	38	1.88
869758--869791	17	2.0	17	94	0	59	11	55	17	14	1.68
876445--876675	44	5.2	44	79	4	250	29	16	24	28	1.97
876445--876675	89	2.6	89	90	2	376	29	16	24	28	1.97
876842--876950	44	2.5	44	90	0	173	30	16	22	30	1.96
877558--877591	17	2.0	17	94	0	59	11	55	17	14	1.68
879691--879715	13	1.9	13	100	0	50	44	8	8	40	1.63
889175--889248	15	4.9	15	78	3	53	62	18	10	8	1.52
889210--889251	10	4.2	10	100	0	84	61	19	9	9	1.53
896628--896677	20	2.5	20	84	9	59	30	0	6	64	1.18
898118--898193	37	2.1	36	83	11	93	53	2	2	40	1.28
905593--905642	12	4.0	13	75	15	52	36	0	40	24	1.55
910481--910559	38	2.1	38	85	0	104	20	26	30	22	1.98
919155--919186	6	5.3	6	100	0	64	15	0	0	84	0.63
924166--924200	15	2.4	15	90	4	54	68	0	14	17	1.21
931120--931198	34	2.3	34	82	0	95	32	21	18	26	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
937341--937402	26	2.3	27	88	2	90	35	0	1	62	1.05
937404--937431	10	2.8	10	100	0	56	7	39	53	0	1.28
945730--945785	25	2.3	23	84	9	67	28	26	23	21	1.99
945737--945792	25	2.2	25	87	0	85	28	26	23	21	1.99
946768--946808	16	2.7	16	85	7	59	17	12	4	65	1.42
948688--948745	24	2.3	26	82	8	66	31	6	10	51	1.62
948736--948799	24	2.7	24	82	2	67	28	7	7	56	1.56
955047--955113	3	22.0	3	80	3	62	38	4	1	55	1.29
960189--960240	26	2.0	27	88	3	79	78	0	19	1	0.84
960205--960237	16	2.1	16	88	11	50	75	0	21	3	0.93
961441--961651	44	4.7	45	70	9	155	27	25	23	23	2.00
961441--961674	89	2.6	89	85	2	310	29	24	24	22	1.99
961457--961674	45	4.9	44	71	9	156	27	25	24	22	2.00
961678--962679	100	10.1	100	85	3	1284	32	22	20	23	1.98
961678--962679	299	3.3	298	85	3	1313	32	22	20	23	1.98
961687--962695	50	20.2	50	72	5	644	32	22	21	23	1.98
962791--962912	44	2.8	44	81	9	117	31	16	24	27	1.96
963711--963742	14	2.2	15	94	5	57	18	3	0	78	0.89
964357--964413	22	2.6	22	83	2	62	42	5	0	52	1.24
967256--967545	151	1.9	151	89	0	445	27	27	17	27	1.98
977716--977741	12	2.2	12	100	0	52	26	34	23	15	1.94

Tables:   1   2   3

The End!