genome.fa.s3779.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: scaffold290
Parameters: 2 7 7 80 10 50 1000
Length:  778129

Tables:   1   2   3   

This is table  2  of  3  ( 300 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
271005--271126	60	2.0	60	85	6	167	34	14	27	23	1.94
271013--271154	30	4.7	30	82	2	117	40	13	23	22	1.90
271006--271212	30	6.9	31	75	10	84	37	13	24	24	1.92
271405--271510	52	2.0	52	100	0	212	31	13	22	33	1.92
272447--272506	30	2.0	30	83	3	75	40	1	38	20	1.62
272721--272757	9	4.1	9	92	0	65	29	10	13	45	1.77
272810--272840	9	3.4	9	90	0	53	38	22	12	25	1.90
273495--273605	53	2.1	53	87	0	159	27	20	35	17	1.95
280014--280613	44	13.3	45	71	8	301	30	21	19	28	1.97
280153--280541	45	8.7	44	70	9	198	31	21	18	28	1.97
280153--280449	133	2.2	133	92	0	477	30	21	18	28	1.97
281225--281267	22	2.0	22	95	0	77	13	25	11	48	1.77
284423--284475	22	2.4	21	75	9	52	49	1	11	37	1.50
289110--289157	18	2.7	18	80	6	53	33	4	4	58	1.36
291496--291528	15	2.2	15	100	0	66	42	6	12	39	1.67
302793--302887	34	2.8	34	90	0	136	14	14	33	36	1.87
302793--302913	34	3.6	33	84	4	118	17	14	33	35	1.89
304483--304577	47	2.0	47	93	0	163	32	24	14	28	1.95
306019--306478	230	2.0	230	99	0	902	17	35	12	35	1.88
308799--309310	229	2.3	227	97	1	963	35	15	20	28	1.94
308799--309304	113	4.5	113	74	11	453	35	16	20	28	1.94
309682--309749	16	4.2	16	98	0	127	38	35	0	26	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
318324--318387	29	2.2	29	82	2	74	35	6	15	42	1.72
329456--329493	13	2.9	14	80	11	53	18	7	15	57	1.62
329824--329849	13	2.0	13	100	0	52	38	7	15	38	1.76
336023--336371	97	3.5	100	78	10	327	29	21	16	31	1.96
340943--340967	13	1.9	13	100	0	50	32	4	0	64	1.12
344561--344607	18	2.6	18	83	6	60	2	21	10	65	1.33
346860--346900	22	2.0	22	90	9	68	48	0	0	51	1.00
352227--352269	3	14.3	3	95	0	77	32	34	0	32	1.58
355401--355441	17	2.3	19	84	16	52	29	12	0	58	1.34
360153--360265	58	1.9	58	85	3	156	26	30	7	35	1.85
365551--365701	77	2.0	77	93	0	257	27	19	16	37	1.93
367281--368105	424	1.9	420	85	5	1113	39	8	12	38	1.75
369331--369356	3	8.7	3	100	0	52	0	30	34	34	1.58
376268--376377	21	5.3	21	85	7	138	16	22	17	43	1.87
381942--381986	21	2.1	21	88	8	65	31	0	0	68	0.89
405334--405359	13	2.0	13	100	0	52	38	7	15	38	1.76
407177--407201	12	2.1	12	100	0	50	24	36	24	16	1.94
407321--407413	9	10.3	9	88	0	132	34	24	9	31	1.88
407321--407413	27	3.4	27	92	0	159	34	24	9	31	1.88
413535--413610	24	3.2	23	85	10	100	43	17	14	25	1.86
415862--415948	27	3.2	27	64	20	72	37	11	12	37	1.80
422556--422589	11	3.0	12	83	16	54	67	0	0	32	0.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
424708--424738	6	5.2	6	100	0	62	32	0	51	16	1.44
425396--425704	126	2.5	124	81	6	340	24	12	23	39	1.90
429373--429406	16	2.1	17	94	5	61	52	23	0	23	1.47
432155--432264	56	2.0	56	88	0	166	52	14	12	20	1.73
438749--438790	8	5.1	8	86	13	59	83	0	2	14	0.75
440347--440374	10	2.8	10	100	0	56	10	0	14	75	1.06
440804--441193	44	8.9	44	72	9	181	26	23	19	30	1.98
440764--441193	174	2.5	175	86	4	589	26	23	20	30	1.99
440903--441316	44	9.6	42	73	10	171	27	23	18	29	1.98
441005--441278	131	2.1	131	92	0	458	27	23	20	28	1.99
440692--441370	174	3.9	171	78	7	539	27	22	19	30	1.98
441709--441744	9	4.0	9	92	0	63	25	11	19	44	1.83
442296--442321	11	2.4	11	100	0	52	26	0	34	38	1.57
443253--443366	42	2.7	42	88	0	156	27	30	13	28	1.94
443491--443516	3	8.7	3	100	0	52	30	0	0	69	0.89
450206--450245	21	1.9	21	84	0	53	22	30	0	47	1.52
458659--458720	31	2.0	32	90	3	99	37	6	12	43	1.69
459124--459178	16	3.4	16	92	0	92	38	7	25	29	1.83
459160--459252	45	2.1	44	90	6	143	33	5	25	35	1.79
464915--465045	64	2.0	65	86	5	183	33	9	15	41	1.80
471645--471677	17	1.9	17	93	0	57	21	18	27	33	1.96
476636--476699	23	3.0	21	74	17	60	60	15	3	20	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
476884--476938	21	2.7	21	91	5	87	36	12	10	40	1.79
477225--477294	28	2.5	28	83	9	88	54	27	1	17	1.51
480062--480118	30	2.0	28	83	13	71	42	21	7	29	1.79
487649--487688	20	2.0	20	85	9	55	35	10	12	42	1.76
488262--488336	20	3.8	20	70	22	59	45	10	2	41	1.53
502401--502469	30	2.3	30	82	0	84	39	23	15	21	1.92
503757--503841	25	3.2	26	74	15	77	61	1	3	34	1.21
503838--503877	3	13.3	3	89	0	62	62	0	5	32	1.17
507030--507094	3	21.7	3	93	0	112	66	3	0	30	1.07
508342--508381	20	2.1	19	90	4	62	50	0	27	22	1.50
515224--515293	35	2.0	35	97	0	131	45	0	24	30	1.53
516121--516185	19	3.4	19	75	12	69	30	0	3	66	1.07
516416--516455	20	1.9	21	85	10	55	27	2	2	67	1.16
517527--517610	42	2.0	42	88	4	125	40	3	5	50	1.44
518241--518293	25	2.1	25	82	6	63	54	0	0	45	0.99
520717--520774	29	2.2	25	73	23	64	43	1	5	50	1.35
520725--520787	29	2.2	29	97	0	117	41	3	6	49	1.44
523997--524048	23	2.2	23	83	12	70	61	0	1	36	1.07
527680--527724	12	3.8	12	78	0	54	57	0	26	15	1.38
531181--531220	7	5.7	7	91	8	64	12	12	0	75	1.06
531190--531219	13	2.3	13	100	0	60	13	13	0	73	1.10
537050--537108	27	2.1	28	84	9	77	64	5	3	27	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
537172--537212	15	2.6	16	75	17	50	53	7	4	34	1.50
537743--537791	10	5.0	10	78	12	57	79	0	20	0	0.73
537745--537788	14	3.1	14	83	3	61	79	0	20	0	0.73
537757--537791	11	3.2	11	88	11	54	82	0	17	0	0.66
537743--537791	25	1.9	26	88	12	75	79	0	20	0	0.73
544038--544111	31	2.4	31	88	0	112	35	41	2	20	1.66
549101--549146	19	2.3	20	85	3	58	28	4	6	60	1.40
549485--549527	18	2.4	18	80	7	52	74	2	2	20	1.04
549707--549751	22	2.0	22	100	0	90	48	26	8	15	1.74
549630--549843	108	2.0	110	85	4	299	40	22	8	28	1.83
549878--549927	18	2.8	18	84	0	55	72	0	4	24	1.02
549897--549940	18	2.4	18	100	0	88	65	0	4	29	1.12
551058--551606	284	1.9	283	94	1	965	30	9	19	41	1.82
554241--554271	2	15.5	2	93	0	53	0	51	0	48	1.00
565942--565974	12	2.6	13	80	9	50	39	18	9	33	1.82
571243--571302	21	2.9	21	79	0	75	50	15	18	16	1.79
574740--574884	35	4.1	35	83	7	168	21	31	24	23	1.99
574740--574884	34	4.1	37	84	4	167	21	31	24	23	1.99
574752--574884	71	1.9	72	85	4	189	21	29	24	24	1.99
591516--591571	25	2.2	25	84	6	69	35	25	19	19	1.95
591536--591593	25	2.3	25	87	0	80	34	22	22	20	1.97
607398--607473	23	3.3	23	94	0	134	21	18	26	34	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
612840--613062	113	2.0	113	98	1	430	44	5	4	45	1.46
612888--613062	60	3.1	59	71	21	181	43	4	5	46	1.46
613124--613169	24	2.0	22	83	8	56	41	8	0	50	1.33
613124--613163	16	2.5	17	80	19	50	42	10	0	47	1.37
614530--614569	19	2.2	18	95	4	71	65	0	0	35	0.93
620154--620236	43	1.9	43	90	0	130	21	19	19	39	1.92
620160--620266	43	2.5	43	83	3	126	20	19	21	38	1.94
622626--622723	41	2.4	41	82	1	108	51	10	5	33	1.58
627024--627058	15	2.3	15	90	5	52	34	2	5	57	1.37
629458--629686	69	3.3	69	85	0	314	31	24	17	25	1.97

Tables:   1   2   3