genome.fa.s3779.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: scaffold290
Parameters: 2 7 7 80 10 50 1000
Length:  778129

Tables:   1   2   3   

This is table  3  of  3  ( 300 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
629347--629722	138	2.7	137	77	4	398	32	23	18	26	1.97
630661--630733	19	3.8	19	90	0	119	36	8	19	35	1.81
636089--636139	6	8.3	6	76	10	50	80	0	15	3	0.86
636087--636148	24	2.6	23	82	5	70	75	0	20	3	0.94
636091--636147	16	3.5	17	72	18	59	77	0	19	3	0.92
637507--637715	44	5.0	44	83	11	276	25	18	25	30	1.98
637595--637661	34	2.0	34	96	0	125	25	23	23	26	2.00
637556--637705	78	1.9	78	91	0	246	25	19	25	30	1.98
637714--638106	167	2.3	169	82	6	435	27	18	26	27	1.98
638050--638398	50	7.2	50	62	8	153	29	20	23	26	1.99
638050--638431	100	3.9	100	83	7	514	30	20	22	26	1.98
638237--638418	91	2.0	92	94	1	321	26	22	24	26	2.00
639043--639093	18	2.8	17	81	18	66	39	11	17	31	1.86
639053--639093	20	2.0	21	95	4	75	41	9	19	29	1.83
639296--639340	23	2.0	23	81	0	54	22	0	15	62	1.33
641486--641522	13	2.5	15	79	20	51	24	5	2	67	1.25
641488--641517	13	2.2	14	94	5	53	23	6	0	70	1.11
642464--642509	22	2.1	22	100	0	92	28	13	13	45	1.80
642298--642699	212	1.9	212	99	0	795	37	15	18	28	1.92
649020--649057	18	2.2	17	90	9	60	52	5	0	42	1.24
649094--649519	209	2.0	210	99	0	836	45	10	12	30	1.77
652141--653080	113	8.3	112	88	4	1291	22	21	24	31	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
652141--653080	114	8.3	114	88	2	1326	22	21	24	31	1.98
652141--653079	340	2.8	337	88	4	1350	22	21	24	31	1.98
654816--654881	30	2.1	32	91	5	109	46	22	6	24	1.74
657312--657395	43	2.0	43	92	0	141	47	9	1	41	1.44
657346--657746	65	6.2	65	98	0	750	46	9	1	42	1.46
665261--665405	43	3.4	43	82	11	172	35	25	20	18	1.95
667837--667890	19	2.9	17	76	13	54	27	7	1	62	1.32
668499--668539	2	20.5	2	84	0	55	46	0	4	48	1.23
671804--671949	48	3.0	45	66	16	112	21	32	4	41	1.72
675077--675118	19	2.2	19	86	0	57	47	2	0	50	1.14
676702--676774	37	2.0	37	100	0	146	21	2	20	54	1.57
679959--679997	14	3.0	12	82	17	51	64	2	0	33	1.08
679967--679996	14	2.1	14	100	0	60	63	0	0	36	0.95
680240--680758	147	3.5	147	97	0	966	32	21	22	23	1.98
689326--689350	7	3.6	7	100	0	50	16	0	0	84	0.63
689934--690006	21	3.7	20	70	17	53	56	5	8	30	1.51
690225--690265	19	2.2	19	87	12	59	39	4	0	56	1.21
690251--690293	15	3.1	13	80	12	50	25	4	0	69	1.07
698677--698768	46	2.0	45	83	6	114	23	25	16	34	1.95
704575--704604	15	1.9	16	93	6	53	46	10	0	43	1.37
712576--712633	22	2.6	22	81	7	64	41	17	5	36	1.72
712612--712667	19	2.9	19	97	0	103	37	16	8	37	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
715962--716015	18	2.9	18	86	2	72	40	46	1	11	1.50
718688--718728	20	2.1	20	86	4	57	41	2	4	51	1.36
728607--728653	21	2.3	21	77	3	60	51	4	4	40	1.41
730023--730052	16	1.9	15	93	6	51	53	6	3	36	1.44
729976--730087	56	2.0	56	98	0	215	49	10	5	34	1.61
730818--730846	13	2.2	13	100	0	58	44	24	13	17	1.85
731013--731066	21	2.5	23	76	11	60	35	12	7	44	1.71
765091--765153	25	2.5	25	81	0	72	23	20	12	42	1.86
765150--765220	23	3.1	23	83	4	72	8	16	25	49	1.74
767552--767583	7	4.6	7	96	0	55	31	0	3	65	1.08
770648--770826	64	2.8	63	87	6	231	40	18	8	31	1.81
771261--771504	122	2.0	122	87	1	355	29	23	8	38	1.84
772127--772151	13	1.9	13	100	0	50	40	24	4	32	1.73
776105--776136	7	4.6	7	100	0	64	40	0	0	59	0.97
777527--777662	39	3.5	38	79	6	139	37	23	20	18	1.94
777699--777896	41	4.8	41	83	2	236	19	21	26	32	1.97

Tables:   1   2   3

The End!