genome.fa.s4285.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: scaffold306
Parameters: 2 7 7 80 10 50 1000
Length:  585619

Tables:   1   2   3   

This is table  3  of  3  ( 276 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
510731--510847	23	5.1	23	69	13	71	27	22	18	31	1.97
514667--514975	132	2.3	131	81	4	334	31	12	21	34	1.90
514602--515115	133	3.9	131	75	5	423	30	13	21	34	1.91
520279--520323	10	4.5	10	86	8	65	28	17	2	51	1.58
520271--520323	10	5.3	10	84	8	54	32	16	1	49	1.57
520295--520324	9	3.2	9	90	9	51	26	23	0	50	1.50
520256--520334	19	4.0	20	72	18	74	29	17	2	50	1.59
521363--521401	20	2.0	20	85	10	53	76	10	2	10	1.10
523307--523369	30	2.1	30	94	5	110	25	30	25	19	1.98
528502--528612	50	2.2	50	86	0	168	30	30	24	14	1.94
530718--530748	16	1.9	16	93	0	53	22	16	22	38	1.92
534210--534350	44	3.3	43	81	5	142	30	25	18	25	1.98
534191--534354	42	3.8	44	74	12	142	31	25	17	25	1.97
537691--537788	42	2.3	42	94	0	169	18	35	24	21	1.95
537895--537936	21	2.0	21	90	0	66	45	21	9	23	1.81
548371--548478	43	2.5	43	86	1	153	31	25	15	26	1.96
548593--548799	31	6.7	31	84	1	265	42	15	10	31	1.81
548593--548810	92	2.4	92	86	2	276	43	16	9	30	1.79
552846--553036	95	2.0	95	93	2	330	40	9	16	32	1.82
553156--553304	41	3.6	41	84	1	183	20	30	17	32	1.95
553211--553280	20	3.5	20	70	3	68	15	30	17	37	1.91
556836--556922	42	2.1	42	93	0	147	40	2	20	36	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
558252--558316	27	2.4	27	82	5	78	35	12	18	33	1.88
558486--558714	27	8.5	27	84	1	253	42	12	20	24	1.86
559740--559795	25	2.2	25	81	6	60	42	7	7	42	1.59
562724--563219	133	3.7	133	92	1	791	28	24	19	27	1.98
571186--571244	22	2.7	22	84	7	75	42	16	3	37	1.66
571200--571316	19	5.8	19	86	8	126	37	16	9	36	1.81
571223--571316	19	4.8	19	90	5	152	36	15	10	37	1.83
579883--580126	43	5.7	43	86	2	305	28	30	17	23	1.97
579883--580126	129	1.9	128	86	4	348	28	30	17	23	1.97
579903--580152	86	2.9	84	79	9	265	28	31	16	23	1.96
579903--580152	129	1.9	128	84	4	333	28	31	16	23	1.96
580609--580642	17	1.9	18	94	5	61	0	29	38	32	1.58
585254--585297	23	1.9	23	86	9	63	68	2	20	9	1.28
585580--585619	20	2.1	19	85	4	53	50	0	5	45	1.23

Tables:   1   2   3

The End!