genome.fa.s4285.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: scaffold306
Parameters: 2 7 7 80 10 50 1000
Length:  585619

Tables:   1   2   3   

This is table  2  of  3  ( 276 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
288871--288907	15	2.5	14	84	16	56	32	0	10	56	1.34
290904--290962	13	4.5	13	91	0	73	32	6	32	28	1.83
295401--295683	50	5.7	50	69	4	194	26	25	19	28	1.98
295389--295675	99	2.9	99	89	1	423	26	24	20	28	1.99
295871--296049	88	2.0	88	87	0	259	24	26	24	25	2.00
297207--297251	19	2.5	18	79	10	56	0	26	0	73	0.84
297210--297261	25	2.1	25	85	7	70	1	21	0	76	0.87
307219--307327	10	11.6	10	71	14	54	55	2	4	37	1.35
307298--307386	33	2.5	35	75	17	85	49	6	8	34	1.61
307369--307427	3	20.3	3	76	13	61	62	1	1	33	1.15
315137--315192	26	2.1	27	83	9	71	30	17	8	42	1.80
322244--322282	20	1.9	21	84	5	53	53	2	7	35	1.43
322649--322716	31	2.2	31	100	0	136	47	0	11	41	1.40
323432--323479	24	2.1	22	84	7	60	33	25	10	31	1.89
332558--332641	29	2.9	29	78	7	107	19	22	9	48	1.77
346023--346073	27	1.9	26	88	4	75	17	0	7	74	1.05
351528--351805	143	1.9	144	85	2	380	25	24	16	33	1.96
354753--354820	22	3.2	22	64	19	63	44	4	10	41	1.58
354719--354842	41	3.0	41	100	0	248	41	4	9	43	1.59
356582--356624	22	1.9	23	90	4	70	34	4	0	60	1.17
376939--376967	6	4.8	6	100	0	58	17	0	0	82	0.66
379379--379415	18	2.1	18	89	0	56	24	24	8	43	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
379667--379710	21	2.1	21	91	0	70	29	52	15	2	1.55
380890--381222	125	2.7	126	89	1	490	28	16	15	38	1.90
381282--381387	33	3.2	34	85	4	126	45	12	0	42	1.41
381439--381509	21	3.4	21	62	0	52	47	22	0	29	1.51
381442--381524	42	2.0	42	90	4	132	48	24	0	27	1.52
381500--381538	15	2.6	16	84	12	55	56	33	0	10	1.33
381911--381963	25	2.1	25	83	13	65	39	1	3	54	1.29
384868--385708	418	2.0	418	86	2	1172	29	12	19	38	1.89
385673--386021	172	2.0	172	98	0	680	34	12	12	41	1.80
403674--403712	15	2.6	15	87	0	60	15	20	12	51	1.76
408164--408348	101	1.8	99	86	6	266	61	5	3	30	1.34
413622--413659	20	1.9	20	88	0	58	23	2	7	65	1.32
419397--419460	1	64.0	1	93	0	110	96	1	0	1	0.23
419387--419458	37	1.9	37	94	0	126	93	4	1	1	0.46
419387--419457	36	1.9	36	94	2	124	92	4	1	1	0.46
422038--422069	16	2.1	15	94	5	55	34	0	31	34	1.58
423441--423758	107	3.0	107	92	0	528	32	18	18	30	1.95
426376--426879	54	9.4	54	73	3	305	37	17	20	24	1.93
426795--427575	348	2.2	348	81	6	902	32	17	17	31	1.94
427476--427652	54	3.3	53	78	3	167	38	18	18	25	1.92
427739--427871	54	2.5	54	80	2	142	36	15	21	27	1.93
428969--428998	15	2.0	15	100	0	60	33	20	26	20	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
429860--430226	182	2.0	181	92	0	608	34	10	15	39	1.83
430919--430946	8	3.5	8	100	0	56	25	0	21	53	1.46
433452--433478	5	5.4	5	100	0	54	40	18	18	22	1.91
437506--437547	22	2.1	19	86	13	57	45	2	0	52	1.13
438116--438174	25	2.4	23	78	13	64	37	1	0	61	1.07
438198--438295	49	2.0	49	96	4	180	24	21	15	38	1.92
443503--443622	41	3.0	41	81	6	136	25	14	28	32	1.94
443545--443642	41	2.4	41	82	3	126	26	15	27	30	1.96
444329--444665	46	7.3	46	94	0	548	27	15	17	39	1.90
445543--445907	54	6.8	54	76	4	283	36	16	20	25	1.94
445597--445866	105	2.5	107	79	5	287	37	17	20	24	1.93
446176--446522	54	6.4	53	79	5	304	38	14	21	25	1.91
446176--446522	162	2.1	162	83	3	421	38	14	21	25	1.91
446176--446466	108	2.7	108	83	3	363	37	14	22	25	1.92
445392--446890	612	2.4	611	81	4	1498	34	17	18	29	1.94
447230--447414	54	3.4	54	73	10	162	36	12	20	30	1.89
447834--448559	347	2.1	348	79	2	742	31	18	16	32	1.94
448528--448814	54	5.3	54	75	4	211	37	18	19	25	1.93
448525--448811	108	2.7	108	81	1	279	37	18	18	25	1.93
448628--448835	108	1.9	108	81	1	247	38	18	17	25	1.93
449123--449257	54	2.5	54	79	2	146	37	15	22	24	1.93
448661--449619	454	2.1	451	84	2	1229	32	18	17	30	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
449561--449903	54	6.4	54	80	4	332	37	14	20	26	1.92
449561--449895	162	2.1	162	83	1	411	37	14	21	26	1.92
449564--449903	108	3.1	108	79	1	387	37	14	20	26	1.92
449810--449946	54	2.5	54	86	2	177	37	16	21	25	1.93
449588--449946	108	3.3	108	79	0	277	38	15	20	26	1.92
449594--449946	162	2.2	162	81	1	393	38	14	20	27	1.91
450179--450600	54	7.8	54	75	2	267	37	13	20	28	1.91
450229--450585	108	3.3	108	77	2	297	37	14	20	27	1.91
450225--450570	162	2.1	161	79	3	363	38	14	20	27	1.91
451811--452019	54	3.9	52	77	8	195	39	14	20	26	1.90
452268--452420	54	2.8	54	86	0	207	41	13	18	26	1.87
451358--452419	454	2.3	454	78	6	1076	33	17	17	31	1.93
451930--452816	397	2.2	397	81	3	1005	34	18	15	31	1.92
452682--452931	54	4.6	54	78	5	200	36	16	20	27	1.93
453981--454263	54	5.2	54	73	5	230	38	13	21	26	1.91
453981--454296	108	2.9	107	75	3	319	37	13	21	27	1.91
453679--454696	563	1.8	562	80	5	1239	34	16	17	31	1.93
453679--454843	563	2.1	562	79	4	1220	34	16	17	30	1.93
454686--454881	54	3.6	54	76	1	196	37	17	18	27	1.93
455224--455343	54	2.2	54	77	5	127	39	19	16	25	1.92
455533--455638	54	2.0	54	82	0	131	43	18	13	24	1.86
455927--456063	54	2.5	54	80	0	148	39	13	21	25	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
456438--456614	54	3.3	54	80	2	187	36	14	22	27	1.92
456462--456643	54	3.4	54	79	1	150	35	14	21	28	1.93
455669--456699	511	2.0	507	80	6	1134	34	16	16	32	1.92
457090--457231	54	2.6	54	78	4	169	35	11	21	30	1.89
457243--457356	54	2.1	54	85	0	156	37	15	21	24	1.93
457256--457389	54	2.5	54	81	0	160	39	16	19	24	1.91
457744--457900	55	2.9	54	79	3	172	35	14	23	26	1.93
458177--458352	54	3.3	52	77	7	138	37	13	22	26	1.91
457235--460709	507	6.9	505	78	3	3216	34	17	17	31	1.93
458735--458913	54	3.3	53	69	10	137	37	13	20	27	1.91
458736--458941	109	1.9	109	83	0	268	39	12	20	27	1.88
459249--459375	54	2.4	54	82	2	148	40	17	15	26	1.90
460232--460467	54	4.4	54	76	2	195	37	14	21	26	1.92
460245--460467	108	2.1	108	81	0	257	38	14	20	26	1.91
460722--460889	54	3.1	53	76	5	176	37	14	22	25	1.92
461097--461300	54	3.8	54	71	8	164	38	12	18	29	1.88
461572--461701	54	2.4	55	84	3	174	35	14	23	26	1.93
461731--461886	54	2.9	54	78	2	152	36	12	21	29	1.90
461786--461917	54	2.4	54	82	2	140	38	15	18	27	1.91
462216--462365	54	2.8	53	79	6	158	37	13	20	29	1.90
462884--463018	54	2.5	54	80	4	166	38	17	19	25	1.92
461849--463033	612	1.9	613	82	2	1459	34	17	17	30	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
463754--463935	97	1.9	96	88	1	274	36	19	14	29	1.92
464421--464481	27	2.3	27	80	8	72	49	4	8	37	1.54
466684--466749	31	2.1	31	91	0	105	33	10	24	31	1.89
467606--467650	24	1.9	23	82	13	56	48	20	6	24	1.73
468756--468984	100	2.3	101	89	1	352	31	24	13	31	1.93
468842--468983	33	4.3	31	72	7	104	28	24	13	33	1.93
483347--483585	87	2.7	87	89	2	365	36	19	16	28	1.93
484953--485005	26	2.1	25	85	3	70	28	35	16	18	1.93
488802--489141	171	2.0	168	93	1	581	27	11	16	45	1.81
505914--506045	69	1.9	69	84	3	178	33	12	10	43	1.76

Tables:   1   2   3