genome.fa.s4301.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: scaffold171
Parameters: 2 7 7 80 10 50 1000
Length:  1364075

Tables:   1   2   3   4   

This is table  2  of  4  ( 369 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
368763--369157	134	2.9	134	78	7	424	39	17	16	26	1.91
369112--369171	27	2.2	27	78	0	66	43	20	11	25	1.85
369304--369359	29	2.0	26	86	10	76	19	26	23	30	1.98
369693--369723	15	2.1	15	100	0	62	35	38	6	19	1.77
369903--369947	19	2.4	19	81	7	56	40	22	2	35	1.66
374082--374124	22	2.0	22	90	0	68	48	11	18	20	1.79
387274--388087	411	2.0	411	92	0	1351	33	16	20	29	1.95
390598--390635	19	2.0	19	85	10	51	21	42	0	36	1.53
397930--398122	48	4.0	48	80	3	219	27	21	28	22	1.99
399473--399523	24	2.1	24	89	7	77	11	35	35	17	1.87
405442--405631	48	4.0	47	81	8	215	25	21	30	22	1.99
405445--405631	96	1.9	96	86	4	261	25	21	31	22	1.98
411462--411499	19	2.0	19	85	10	51	21	42	0	36	1.53
419401--419443	22	2.0	22	86	4	61	18	32	0	48	1.48
440785--440816	15	2.2	15	94	5	57	31	3	0	65	1.08
447915--447993	40	2.0	40	100	0	158	17	34	12	35	1.88
462856--462936	40	2.0	40	97	0	153	51	13	14	19	1.75
480996--481043	23	2.1	23	92	0	78	31	16	25	27	1.97
481732--481771	14	2.9	14	84	0	53	32	7	17	42	1.77
481740--481806	34	1.9	35	87	3	100	32	8	11	46	1.72
481755--481794	20	2.0	20	85	0	53	30	10	10	50	1.69
483307--483521	107	2.0	107	98	1	414	47	14	16	21	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
484374--484401	14	2.0	14	100	0	56	35	14	14	35	1.86
485081--485126	21	2.3	21	85	14	62	45	19	4	30	1.70
489581--489639	30	2.0	30	86	6	84	45	11	8	33	1.71
490661--491699	519	2.0	519	100	0	2078	30	21	15	31	1.95
496573--496618	21	2.3	20	78	14	51	45	17	6	30	1.73
501447--501479	13	2.5	14	90	9	52	0	30	0	69	0.88
501625--501852	7	32.7	7	95	0	359	14	23	1	60	1.43
503597--503648	5	10.2	5	82	12	54	17	1	1	78	0.93
505545--505572	14	2.0	14	100	0	56	57	0	7	35	1.26
507969--508045	27	2.8	26	90	7	118	44	19	15	20	1.87
510837--510917	40	2.0	40	100	0	162	27	27	12	33	1.92
511490--511514	9	2.8	9	100	0	50	36	20	12	32	1.89
513973--514120	49	3.0	49	96	0	278	27	20	8	43	1.80
515315--515583	27	10.0	27	98	0	502	47	22	14	15	1.82
530059--530116	30	1.9	30	86	6	82	18	37	31	12	1.88
533203--533242	20	2.0	20	100	0	80	40	20	20	20	1.92
536853--538816	652	3.0	652	95	0	3448	31	25	15	27	1.96
546848--546920	20	3.7	20	87	3	103	20	24	1	53	1.54
548333--548398	30	2.2	30	86	0	87	21	37	18	22	1.94
560662--560686	3	8.3	3	100	0	50	68	0	0	32	0.90
564513--564681	84	2.0	85	98	1	331	41	13	21	23	1.88
565595--565815	27	8.2	27	84	3	284	40	24	17	17	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
565605--565829	107	2.1	108	88	2	328	38	25	16	19	1.92
565606--565843	54	4.4	54	76	12	202	38	24	18	18	1.93
581740--581875	49	2.8	49	83	5	159	25	26	20	27	1.99
588106--588142	3	12.3	3	88	0	56	37	0	27	35	1.57
589277--589347	9	7.3	9	72	12	52	53	1	4	40	1.29
589266--589347	30	2.7	30	86	3	103	52	1	6	40	1.34
593239--593303	18	3.8	18	86	8	91	47	0	1	50	1.10
593448--593503	15	3.4	16	75	9	60	30	7	3	58	1.42
593581--593618	16	2.3	17	90	4	60	13	7	0	78	0.94
594579--594615	18	2.1	18	100	0	74	29	16	16	37	1.90
598748--598847	39	2.6	38	81	6	112	38	4	9	49	1.53
602059--602114	25	2.2	25	96	0	103	26	16	21	35	1.94
604775--604836	30	2.1	30	100	0	124	50	12	3	33	1.57
606356--606382	14	1.9	14	100	0	54	55	0	29	14	1.40
608166--608209	22	2.0	22	95	0	79	45	15	13	25	1.83
608344--608381	20	1.9	19	85	15	51	50	7	7	34	1.61
610816--610844	14	2.1	14	100	0	58	20	34	6	37	1.80
614116--614142	6	4.5	6	100	0	54	33	29	0	37	1.58
615457--615579	50	2.5	50	82	0	147	34	24	16	25	1.95
621558--621602	23	2.0	23	86	0	63	28	15	13	42	1.85
628840--628877	20	1.9	20	88	0	58	31	13	21	34	1.91
633770--633916	73	2.0	73	94	0	258	41	21	14	21	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
634302--634586	146	2.0	144	86	4	394	31	19	9	39	1.84
636950--636980	15	2.1	15	93	0	53	51	12	9	25	1.70
638959--639004	24	1.9	24	91	8	76	39	21	6	32	1.79
642237--642270	17	2.0	17	100	0	68	23	17	5	52	1.66
649866--649961	25	3.8	25	77	0	102	26	16	21	35	1.95
655533--655557	13	1.9	13	100	0	50	28	24	16	32	1.96
666012--666147	41	3.3	41	95	0	245	23	27	19	28	1.99
667323--667347	13	1.9	13	100	0	50	40	24	4	32	1.73
678631--678926	39	7.6	39	87	3	409	44	21	3	31	1.67
678637--678926	117	2.5	117	90	0	456	44	21	3	30	1.68
679720--679779	30	2.0	30	100	0	120	40	20	13	26	1.89
684131--684170	18	2.2	18	100	0	80	57	22	0	20	1.41
685815--685958	57	2.5	57	82	7	177	47	13	16	22	1.81
686152--686200	18	2.7	18	87	6	64	30	14	6	48	1.67
686183--686214	15	2.2	15	94	5	57	37	3	6	53	1.42
690426--690469	21	2.1	21	95	0	79	63	15	4	15	1.46
690524--690566	21	2.0	23	81	9	54	44	11	11	32	1.77
693456--693565	57	1.9	57	89	7	170	46	16	16	20	1.84
693792--693841	19	2.8	18	87	6	66	30	14	8	48	1.72
693824--693855	15	2.2	15	94	5	57	37	3	6	53	1.42
720910--721002	35	2.6	35	83	5	107	19	12	27	39	1.88
721725--721772	18	2.6	18	83	6	60	50	2	4	43	1.33
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
722385--722414	14	2.1	14	93	0	51	16	43	0	40	1.48
726932--726972	16	2.5	17	80	11	50	36	4	7	51	1.51
739290--739356	14	4.9	14	78	10	75	41	1	26	29	1.65
739307--739350	20	2.2	20	87	0	61	43	2	25	29	1.67
739291--739356	7	9.6	7	77	9	55	40	1	27	30	1.65
770798--771023	29	7.8	29	83	1	220	20	26	13	38	1.90
770798--770940	59	2.4	58	89	4	216	19	27	13	39	1.89
770798--771023	88	2.6	88	81	2	251	20	26	13	38	1.90
777914--777950	18	2.1	18	89	0	56	29	37	0	32	1.58
779917--779963	18	2.6	18	86	6	60	12	0	17	70	1.17
782226--782265	21	1.9	21	84	0	53	45	17	5	32	1.70
783932--783961	15	2.1	15	93	6	53	6	26	0	66	1.16
787792--787844	23	2.3	23	83	6	72	28	0	7	64	1.21
787991--788044	18	2.9	18	82	17	67	66	0	0	33	0.92
788479--788547	35	2.0	35	91	2	113	36	17	8	37	1.81
795026--795050	12	2.1	12	100	0	50	24	36	24	16	1.94
795210--795286	9	8.4	9	84	8	102	37	28	11	22	1.89
795425--795454	13	2.3	13	100	0	60	16	0	43	40	1.48
796481--796548	33	2.1	33	91	0	109	32	10	33	23	1.88
798607--798633	2	13.5	2	100	0	54	48	0	0	51	1.00
801257--801295	3	13.0	3	89	10	62	30	2	0	66	1.05
802621--802684	17	3.6	17	72	15	58	28	12	12	46	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
802613--802683	36	2.0	36	94	0	124	26	12	14	46	1.80
802612--802668	19	3.1	19	71	19	66	26	12	15	45	1.82
802877--802973	49	2.0	48	89	2	149	20	14	22	42	1.88
807715--807778	17	3.6	17	72	15	58	28	12	10	48	1.75
807707--807777	36	2.0	36	91	0	115	26	12	12	47	1.77
824323--824365	19	2.2	20	84	12	63	32	18	0	48	1.48
824542--824728	51	3.7	50	76	7	200	29	27	17	25	1.97
824540--824724	101	1.8	101	89	8	295	30	27	17	24	1.97
836112--836151	21	2.0	20	85	5	53	25	22	15	37	1.93
842206--842235	7	4.3	7	91	0	51	13	26	13	46	1.80

Tables:   1   2   3   4