Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: scaffold171
Parameters: 2 7 7 80 10 50 1000
Length:  1364075

Tables:   1   2   3   4   

This is table  4  of  4  ( 369 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1340685--1340714
15
2.0
15
93
0
51
53
30
0
16
1.44
1340807--1341086
148
1.9
147
81
4
343
31
15
12
40
1.84
1343060--1343167
41
2.6
41
92
0
180
35
17
17
29
1.93
1350297--1350342
23
2.0
23
100
0
92
21
34
26
17
1.95
1354093--1354139
24
2.0
24
100
0
94
25
31
8
34
1.86
1355304--1355330
2
13.5
2
100
0
54
48
0
0
51
1.00
1355734--1355783
21
2.4
21
78
15
68
40
10
2
48
1.48
1355869--1355988
41
2.9
40
85
2
141
30
23
18
28
1.98
1363985--1364015
16
1.9
16
93
0
53
48
16
9
25
1.76

Tables:   1   2   3   4

The End!