genome.fa.s4401.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: scaffold132
Parameters: 2 7 7 80 10 50 1000
Length:  2008648

Tables:   1   2   3   4   5   6   7   

This is table  3  of  7  ( 759 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
676878--676925	24	2.1	24	84	7	64	47	10	2	39	1.49
677534--677783	128	1.9	128	84	7	337	23	7	12	57	1.60
678458--678506	14	3.6	14	81	5	57	0	20	2	77	0.87
684506--684538	8	4.2	8	84	7	50	15	0	33	51	1.43
685412--685498	38	2.3	38	78	11	88	4	17	4	73	1.17
686117--686328	105	2.0	103	80	4	237	24	20	29	25	1.99
692952--692995	18	2.4	18	100	0	88	4	15	0	79	0.89
692952--693007	12	4.9	12	80	12	64	5	16	0	78	0.92
692952--692995	6	7.3	6	89	0	70	4	15	0	79	0.89
695604--695659	22	2.5	24	77	14	64	21	16	16	46	1.84
697702--697895	87	2.2	87	84	5	257	41	20	7	30	1.80
697901--697941	14	2.9	15	82	10	50	51	0	2	46	1.14
698262--698460	87	2.3	87	81	4	240	28	8	20	43	1.80
698286--698454	87	1.9	88	87	1	250	30	8	21	39	1.84
701923--701969	22	2.2	22	84	3	60	61	4	0	34	1.15
702255--702309	21	2.7	19	78	21	58	29	5	0	65	1.15
706261--706359	25	3.9	26	73	13	89	40	11	17	31	1.84
709237--709268	14	2.3	14	94	0	55	18	18	15	46	1.84
716910--716986	30	2.6	31	86	9	101	62	3	1	32	1.22
724211--724274	22	3.0	22	71	19	64	51	9	10	28	1.68
736835--736872	17	2.2	17	90	0	58	44	2	2	50	1.30
745978--746096	42	2.8	43	82	5	152	24	17	27	30	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
749054--749099	23	2.0	22	83	4	56	45	8	8	36	1.66
749432--749578	31	4.5	33	77	8	140	39	3	1	55	1.25
749433--749544	31	3.5	31	86	2	143	40	2	1	55	1.24
760008--760049	20	2.2	19	83	12	50	57	4	19	19	1.58
760508--760537	16	1.9	16	93	6	53	30	0	20	50	1.49
766787--766866	32	2.5	32	90	6	119	51	13	8	26	1.70
768717--768759	21	2.0	21	82	8	52	32	13	6	46	1.71
770274--770320	22	2.2	22	92	3	78	65	0	0	34	0.93
770789--770896	55	2.0	55	85	7	148	38	13	7	39	1.73
771314--771344	2	16.0	2	93	6	55	48	0	0	51	1.00
777394--777442	21	2.3	21	83	13	57	0	34	0	65	0.93
786388--786420	16	2.1	16	100	0	66	21	36	6	36	1.78
787483--787520	10	3.8	10	86	6	51	76	2	0	21	0.91
788055--788142	31	3.0	30	82	9	83	54	2	2	40	1.25
788855--788948	33	2.8	33	84	6	118	35	26	8	29	1.86
789248--789285	2	19.0	2	100	0	76	50	50	0	0	1.00
790257--790316	21	2.7	20	78	17	57	66	0	3	30	1.07
790273--790313	21	1.9	22	85	14	59	73	0	0	26	0.84
801651--801685	18	1.9	18	88	0	52	11	34	31	22	1.90
802929--803021	34	2.7	36	83	11	122	55	1	0	43	1.06
803396--803463	16	4.3	15	77	7	55	30	22	1	45	1.61
803396--803463	32	2.1	32	83	0	82	30	22	1	45	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
803930--803981	15	3.2	15	73	19	50	46	0	0	53	1.00
803943--803979	19	1.9	19	88	0	56	51	0	0	48	1.00
804012--804055	13	3.3	13	79	14	54	52	0	0	47	1.00
806139--806273	45	3.0	45	100	0	270	24	6	35	33	1.82
810754--810802	24	2.0	24	100	0	98	30	4	16	48	1.64
814192--814227	18	2.0	18	94	0	63	33	5	19	41	1.75
820970--821002	6	5.5	6	100	0	66	0	18	48	33	1.48
820962--821002	18	2.3	18	91	0	64	2	19	46	31	1.63
823452--823610	33	4.8	33	86	1	212	25	20	25	28	1.99
823452--823600	66	2.3	66	92	0	244	26	21	22	28	1.99
835104--835163	29	2.1	29	93	0	102	43	10	8	38	1.68
835105--835158	16	3.6	16	65	14	51	42	9	9	38	1.69
835199--835244	21	2.2	21	96	0	83	28	4	15	52	1.61
845351--845638	50	5.8	50	86	2	366	25	22	29	21	1.99
845351--845638	99	2.9	99	83	3	364	25	22	29	21	1.99
845351--845638	149	1.9	148	87	2	416	25	22	29	21	1.99
851800--851842	20	2.2	20	95	0	77	13	11	9	65	1.48
857948--858137	24	7.8	24	77	3	164	28	21	21	28	1.98
857961--858137	49	3.6	49	90	0	255	28	21	21	28	1.99
860738--860766	5	5.8	5	100	0	58	20	58	0	20	1.39
862873--862906	17	2.0	17	88	0	50	61	8	8	20	1.52
865196--865222	11	2.5	11	100	0	54	81	0	0	18	0.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
880579--880670	41	2.2	41	82	3	105	22	35	20	20	1.96
882633--882675	19	2.3	19	83	0	50	27	6	0	65	1.18
886163--886207	23	2.0	23	86	8	65	46	6	6	40	1.56
900536--900578	22	2.0	22	95	0	77	41	27	20	9	1.83
902263--902543	84	3.3	84	68	11	255	27	23	20	27	1.99
902222--903016	128	6.2	127	74	10	544	27	23	20	28	1.99
902126--902937	172	4.7	171	80	7	779	27	23	19	29	1.98
902212--902681	44	10.8	44	70	13	201	26	24	20	28	1.99
902353--902935	44	13.5	42	71	12	193	27	22	20	29	1.98
902312--902807	217	2.3	216	87	2	692	28	22	19	28	1.98
902432--902977	44	12.8	43	72	10	282	28	22	20	28	1.99
911736--912342	266	2.3	267	92	0	982	26	20	26	26	1.99
912381--912706	44	7.5	44	71	14	185	28	20	21	29	1.98
912600--912834	128	1.8	128	83	7	316	28	20	21	29	1.98
912381--912777	217	1.8	217	86	2	573	29	20	20	28	1.98
914126--914168	19	2.3	19	83	0	50	27	6	0	65	1.18
915472--915521	26	1.9	26	95	0	91	34	18	12	36	1.87
918401--918523	62	2.0	62	96	0	228	19	17	15	47	1.82
919047--919196	40	3.7	41	82	4	180	18	28	15	37	1.91
919051--919216	40	4.1	41	80	4	169	18	28	15	37	1.91
922490--922687	42	4.7	42	77	8	190	36	23	13	26	1.92
922511--922678	85	2.0	85	84	2	221	37	22	14	25	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
924204--924266	32	2.0	32	90	0	99	31	3	14	50	1.58
924512--924593	37	2.2	37	83	10	105	35	8	8	47	1.65
936197--936320	27	4.6	27	85	5	135	37	19	20	21	1.94
936255--936396	27	5.3	27	75	1	106	35	18	21	24	1.96
936382--936432	26	1.9	27	88	4	77	25	17	19	37	1.94
936419--936527	24	4.5	24	78	8	96	24	6	20	48	1.72
936699--936837	32	4.4	31	84	4	172	20	22	19	37	1.94
936829--936875	22	2.1	22	84	0	58	19	17	17	46	1.84
939537--939732	51	3.9	49	80	4	205	22	17	28	31	1.97
939540--939732	102	1.9	102	87	3	282	23	18	27	31	1.97
939728--939826	46	2.2	43	82	12	119	23	19	23	34	1.97
948982--949024	21	2.0	21	81	0	50	51	16	0	32	1.45
956086--956480	43	9.2	43	83	3	431	24	31	19	24	1.98
956663--956699	19	1.9	19	94	0	65	59	2	10	27	1.44
963472--963509	18	2.1	18	100	0	76	26	15	5	52	1.64
964368--964407	12	3.3	12	85	0	53	55	12	7	25	1.63
964357--964418	24	2.7	24	76	14	67	51	14	8	25	1.69
965107--965138	16	2.0	16	100	0	64	25	6	6	62	1.42
965786--965818	14	2.3	15	94	5	59	36	33	0	30	1.58
966125--966347	41	5.4	41	92	1	340	28	30	22	17	1.97
966125--966466	41	8.4	41	80	7	324	29	30	22	17	1.97
966541--966653	40	2.8	41	76	4	115	16	21	24	37	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
974265--974315	22	2.3	22	82	0	57	72	0	7	19	1.08
975639--975704	32	2.0	33	97	2	125	25	25	18	30	1.98
980219--981410	89	13.4	89	98	0	2267	29	15	25	29	1.96
983707--984033	27	12.4	27	78	5	292	20	16	21	42	1.89
983916--983952	19	1.9	19	88	0	56	18	21	10	48	1.78
983862--984006	73	2.0	73	86	0	200	20	17	19	42	1.89
987753--987839	10	9.0	9	75	14	50	80	8	1	10	0.96
987753--987847	16	5.8	16	70	17	61	78	8	1	11	1.00
987758--987811	26	2.1	25	86	3	72	83	11	1	3	0.85
987784--987834	12	4.2	12	85	5	50	80	9	0	9	0.91

Tables:   1   2   3   4   5   6   7