Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: scaffold132
Parameters: 2 7 7 80 10 50 1000
Length:  2008648

Tables:   1   2   3   4   5   6   7   

This is table  7  of  7  ( 759 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1945936--1946016
7
11.9
7
76
10
78
17
0
49
33
1.47
1945962--1946016
19
2.8
20
80
5
67
20
0
47
32
1.50
1945955--1946008
26
2.1
26
85
0
72
20
0
48
31
1.50
1946092--1946195
14
7.4
14
79
4
111
25
0
46
27
1.59
1946117--1946192
7
10.9
7
87
5
100
25
0
46
28
1.53
1946092--1946195
7
14.9
7
76
4
75
25
0
46
27
1.59
1946421--1946447
14
1.9
14
100
0
54
48
0
7
44
1.31
1946449--1946489
20
2.0
20
85
0
55
60
4
7
26
1.43
1946484--1946524
18
2.3
18
91
4
66
82
0
4
12
0.81
1947711--1947735
10
2.5
10
100
0
50
48
12
8
32
1.69
1947771--1948490
313
2.3
310
94
2
1289
35
12
13
38
1.84
1956800--1956919
41
2.9
41
86
2
168
21
22
20
35
1.96
1959960--1960053
45
2.0
47
85
4
129
50
3
5
41
1.41
1960897--1960946
25
2.0
26
84
4
66
56
2
0
42
1.11
1961759--1961791
17
2.1
16
88
11
50
15
48
24
12
1.78
1967583--1967675
24
3.8
24
79
8
91
68
12
6
11
1.37
1967576--1967653
12
6.4
12
77
7
50
71
12
3
11
1.26
1967577--1967627
6
8.7
6
95
4
95
68
15
0
15
1.21
1967618--1967664
20
2.4
19
86
10
60
74
8
10
6
1.22
1968074--1968103
14
2.2
14
94
5
53
73
0
13
13
1.10
1969347--1969702
87
4.1
87
91
0
541
29
20
24
25
1.99
1969407--1969543
43
3.2
43
63
24
106
29
21
22
27
1.99
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1969686--1969830
44
3.3
44
74
10
152
29
22
27
20
1.98
1970260--1970292
17
2.1
16
88
11
50
15
48
24
12
1.78
1980596--1980653
26
2.2
26
81
12
64
53
1
0
44
1.10
1980828--1980862
3
11.7
3
100
0
70
65
0
0
34
0.93
1980861--1980891
3
10.3
3
100
0
62
32
0
0
67
0.91
1986899--1986991
9
10.6
9
79
11
95
33
0
2
64
1.06
1986909--1986994
17
5.0
17
78
12
95
37
0
1
61
1.04
1989167--1989196
15
1.9
16
93
6
53
26
0
0
73
0.84
1992361--1992395
6
5.5
6
87
12
52
65
0
20
14
1.26
1995381--1995410
6
5.0
6
100
0
60
66
0
0
33
0.92
1996255--1996293
17
2.4
16
84
16
53
56
0
12
30
1.37
2004530--2004809
82
3.4
82
90
1
411
44
14
15
26
1.84
2006124--2006258
40
3.4
40
73
10
107
36
22
23
17
1.95
2006298--2006599
41
7.4
41
87
4
405
14
23
26
35
1.94
2006298--2006698
41
9.8
40
80
9
348
15
23
25
34
1.95
2006298--2006699
123
3.3
120
80
9
391
16
23
25
34
1.95
2006298--2006681
82
4.7
81
82
7
395
15
23
25
35
1.94

Tables:   1   2   3   4   5   6   7

The End!