genome.fa.s552.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: scaffold90
Parameters: 2 7 7 80 10 50 1000
Length:  1707176

Tables:   1   2   3   4   5   

This is table  2  of  5  ( 568 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
389640--390129	178	2.8	178	88	2	700	31	18	22	27	1.97
389740--390083	133	2.6	133	77	9	335	30	19	22	27	1.98
390085--390276	89	2.2	89	83	0	267	27	21	23	26	1.99
390273--390568	96	3.2	94	72	10	286	31	16	20	31	1.94
398427--398484	30	1.9	30	89	0	89	41	3	24	31	1.71
398697--398727	13	2.4	13	94	0	53	32	0	12	54	1.38
402393--402422	14	2.1	14	93	0	51	40	0	13	46	1.43
408065--408094	14	2.1	14	100	0	60	43	0	13	43	1.43
412165--412191	2	13.5	2	100	0	54	51	0	0	48	1.00
417353--417690	167	2.0	168	98	1	651	39	9	9	41	1.70
420608--420657	18	3.1	16	81	13	57	30	12	20	38	1.88
420609--420649	18	2.3	18	100	0	82	36	9	24	29	1.87
421491--421557	34	1.9	35	87	3	100	44	14	8	31	1.76
430420--430526	43	2.5	42	79	11	128	32	25	15	26	1.96
431635--431659	13	1.9	13	100	0	50	40	24	4	32	1.73
438611--438722	41	2.7	41	80	0	125	23	21	23	32	1.98
445619--445674	29	2.0	28	86	10	78	30	28	3	37	1.74
454116--454182	22	3.1	21	72	16	64	43	22	22	11	1.86
454273--454336	26	2.5	25	77	7	65	26	17	18	37	1.93
454303--454370	27	2.5	26	83	9	75	20	23	16	39	1.91
454333--454449	27	4.3	27	75	4	101	23	17	17	40	1.91
454333--454450	54	2.2	54	81	0	128	23	17	17	40	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
456399--456694	152	1.9	152	91	0	484	26	31	12	29	1.93
457957--458023	22	3.1	21	72	16	55	44	19	22	13	1.85
458159--458272	27	4.2	27	79	4	113	22	18	19	39	1.92
458157--458260	54	1.9	54	84	3	138	23	18	19	39	1.92
458172--458274	27	3.8	27	83	10	138	22	18	18	40	1.91
458172--458315	27	5.4	27	80	9	134	21	16	20	41	1.90
460975--461010	18	2.0	18	88	0	54	19	8	0	72	1.10
462237--462278	21	2.0	22	90	4	68	33	2	4	59	1.31
462243--462377	60	2.3	61	84	6	179	42	5	8	43	1.58
462348--462442	29	3.1	29	68	26	77	53	2	7	36	1.41
462348--462452	34	3.2	32	72	18	92	55	1	8	34	1.42
463084--463127	23	2.0	23	81	4	54	59	4	4	31	1.38
464534--464615	38	2.2	38	84	2	103	36	15	14	32	1.89
466686--466745	31	2.0	31	86	3	86	36	6	8	48	1.60
468004--468206	91	2.3	89	80	3	210	34	14	20	30	1.93
469703--469736	6	5.7	6	92	0	59	14	17	0	67	1.23
469823--469851	9	3.0	10	90	10	51	20	20	0	58	1.39
472172--472246	20	3.8	21	70	19	54	66	4	6	22	1.32
472171--472210	21	2.0	19	85	9	53	60	7	7	25	1.50
472792--472854	21	3.0	21	71	8	58	26	3	0	69	1.03
472828--472862	16	2.2	16	90	5	54	34	0	0	65	0.93
473200--473267	33	2.0	35	88	11	106	48	1	1	48	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
473783--473843	31	1.9	32	86	3	88	42	3	8	45	1.50
476778--476835	12	4.8	12	76	0	53	6	1	18	72	1.16
480887--480944	22	2.6	22	84	7	73	43	17	3	36	1.66
480900--480971	21	3.5	20	84	11	74	38	15	8	37	1.77
480934--480973	21	1.9	21	100	0	80	35	15	12	37	1.85
491273--491313	20	2.0	20	85	0	55	63	4	0	31	1.15
492364--492406	22	2.0	22	85	0	59	55	9	13	20	1.66
494068--494133	17	3.9	17	83	0	87	43	13	6	36	1.69
494778--494838	18	3.4	18	79	0	77	47	21	3	27	1.66
494775--494856	36	2.3	36	86	0	110	46	21	4	26	1.72
495086--495198	29	3.5	30	79	13	102	46	14	4	34	1.64
495116--495190	29	2.5	31	84	8	109	45	16	5	33	1.69
500419--500615	94	2.1	95	98	1	378	32	5	8	53	1.53
500607--500670	25	2.5	28	74	23	68	37	0	4	57	1.19
501189--501233	22	2.1	21	83	4	54	44	0	13	42	1.43
502135--502440	143	2.1	144	96	1	569	47	9	3	39	1.53
502426--502452	14	1.9	14	100	0	54	48	0	7	44	1.31
512837--512878	10	4.5	10	82	14	54	21	0	4	73	1.01
512843--512895	4	12.5	4	77	18	54	22	0	1	75	0.90
516186--516735	274	2.0	275	99	0	1093	29	17	13	39	1.89
524551--524655	43	2.4	43	82	0	129	30	18	25	25	1.98
545905--545947	16	2.6	16	77	3	50	37	0	6	55	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
552962--553024	30	2.1	30	100	0	126	34	30	9	25	1.88
568655--568695	19	2.2	19	100	0	82	41	0	4	53	1.22
585615--585683	29	2.3	29	85	5	84	47	13	17	21	1.81
593338--593397	16	3.7	16	73	20	61	35	25	8	31	1.85
596953--597004	24	2.2	24	92	0	86	51	7	3	36	1.49
599814--599996	36	5.1	36	76	11	169	25	21	16	36	1.94
599829--600003	70	2.4	71	86	4	253	26	22	14	37	1.92
604772--604919	73	2.0	74	98	1	289	55	24	8	11	1.63
607528--607570	19	2.1	21	87	8	63	58	0	4	37	1.19
607534--607570	10	3.5	11	82	17	51	54	0	5	40	1.24
607584--607652	22	3.5	20	83	11	79	62	2	7	27	1.36
607724--607761	20	1.9	20	94	0	67	73	2	0	23	0.95
615264--615451	101	1.9	101	82	6	238	25	20	20	33	1.97
615567--615804	44	5.2	44	70	15	167	28	21	16	32	1.95
615523--615845	142	2.3	142	93	0	547	29	21	16	32	1.95
616062--616852	87	9.1	87	91	0	1127	24	23	22	29	1.99
616398--616531	43	3.1	43	66	21	116	25	23	22	29	1.99
616656--616792	43	3.2	43	63	17	111	23	18	25	32	1.97
618065--618125	13	4.5	14	79	8	72	14	14	0	70	1.17
618065--618124	20	3.0	20	87	0	93	15	15	0	70	1.18
618065--618125	7	9.0	7	80	7	72	14	14	0	70	1.17
618522--618572	24	2.1	23	82	13	59	7	11	7	72	1.28
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
618510--618599	27	3.3	26	82	11	92	6	7	10	75	1.18
618495--618599	30	3.3	32	75	12	92	7	9	8	74	1.23
618557--618600	12	3.6	12	81	3	52	2	4	9	84	0.85
626417--626887	234	2.0	235	99	0	935	46	18	15	19	1.84
631358--631397	19	2.0	20	85	4	55	32	5	10	52	1.56
640884--641532	98	6.6	98	100	0	1298	27	11	25	36	1.90
647920--647970	23	2.2	23	89	6	77	41	19	9	29	1.84
676744--676796	21	2.5	21	79	8	63	30	30	13	26	1.94
677454--677533	38	2.1	38	81	9	90	28	11	30	30	1.91
679110--679143	15	2.3	15	90	5	52	38	8	29	23	1.85
680982--681018	18	2.1	18	89	0	56	18	27	18	35	1.95
681128--681153	12	2.2	12	100	0	52	38	11	15	34	1.83
682623--682670	19	2.5	19	96	0	87	14	27	39	18	1.90
691342--691403	26	2.4	26	88	0	88	38	14	11	35	1.82
699606--699645	19	2.1	19	95	0	71	42	2	5	50	1.37
702149--702195	23	2.0	23	95	0	85	29	10	8	51	1.66
706542--706918	188	2.0	188	82	3	454	37	18	13	30	1.90
710768--710796	9	3.2	9	100	0	58	41	0	20	37	1.53
710919--710970	10	5.1	10	77	15	54	44	0	15	40	1.46
724815--724957	27	5.3	27	87	1	189	43	18	20	16	1.88
725049--725088	20	2.0	21	85	14	57	35	10	10	45	1.71
725124--725204	26	3.1	26	73	7	74	19	22	23	34	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
725315--725393	28	2.8	28	96	0	149	21	26	24	27	1.99
725574--725598	13	1.9	13	100	0	50	24	16	0	60	1.36
726272--726360	25	3.3	25	66	22	72	32	23	2	41	1.67
741444--741598	76	2.0	77	98	1	303	49	6	16	28	1.70
742472--742658	93	2.0	94	98	1	367	48	9	6	35	1.62
746309--746404	41	2.3	41	89	0	147	45	29	3	21	1.67
746427--746503	40	1.9	39	87	7	111	19	1	32	46	1.58
746445--746505	7	9.0	7	82	7	54	22	0	31	45	1.53
746861--746894	2	17.0	2	100	0	68	50	0	0	50	1.00
749784--749814	14	2.2	14	94	0	53	38	9	6	45	1.63

Tables:   1   2   3   4   5