genome.fa.s552.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: scaffold90
Parameters: 2 7 7 80 10 50 1000
Length:  1707176

Tables:   1   2   3   4   5   

This is table  3  of  5  ( 568 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
750457--750497	18	2.3	18	86	0	55	26	41	24	7	1.81
750463--750490	12	2.3	12	100	0	56	25	42	25	7	1.80
750618--750706	33	2.7	33	82	3	108	24	43	10	21	1.83
750986--751082	47	2.1	47	90	3	151	49	11	6	32	1.63
751021--751161	62	2.3	62	93	1	239	46	7	6	39	1.57
754163--754573	211	1.9	209	89	5	630	39	16	9	34	1.81
767261--767384	60	2.1	60	87	3	178	21	15	12	50	1.77
767589--767644	9	6.0	9	78	14	60	19	3	3	73	1.13
769487--769528	17	2.4	18	84	11	61	42	0	11	45	1.41
769477--769529	15	3.3	17	79	12	67	37	0	13	49	1.42
769903--770100	76	2.6	76	76	10	192	35	4	17	42	1.69
770491--770711	41	5.4	41	92	0	343	28	19	28	23	1.98
770905--770975	37	2.0	37	86	8	103	29	9	21	39	1.85
778200--778377	41	4.1	41	81	14	212	24	15	20	39	1.91
778264--778369	52	2.0	52	96	0	194	24	16	17	40	1.90
779061--779289	82	2.8	82	87	0	323	29	18	26	25	1.98
779061--779281	41	5.4	41	85	2	291	29	19	25	25	1.98
785787--785840	27	2.0	27	88	0	81	46	9	9	35	1.68
797156--797194	3	13.0	3	100	0	78	33	0	0	66	0.92
807534--807577	21	2.1	21	95	0	79	47	29	6	15	1.72
810668--810701	16	2.1	16	94	0	59	79	0	8	11	0.94
814762--814811	10	5.1	10	79	16	52	2	18	2	78	0.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
814765--814799	16	2.2	16	94	0	61	0	17	2	80	0.84
816628--816705	35	2.2	37	95	4	142	29	10	12	47	1.75
832784--832821	18	2.2	17	86	13	51	34	0	18	47	1.49
833048--833164	23	5.3	23	72	10	118	23	19	24	32	1.98
833048--833164	45	2.7	42	82	12	155	23	19	24	32	1.98
835812--835929	54	2.2	54	83	3	157	27	26	27	18	1.98
835835--835960	54	2.3	54	84	0	162	26	26	26	20	1.99
848027--848078	25	2.1	25	96	0	95	38	19	17	25	1.93
849974--850023	22	2.2	22	82	10	57	34	4	24	38	1.74
852160--852273	54	2.1	54	78	4	122	26	22	29	21	1.99
852527--854085	390	4.0	390	95	0	2811	32	14	20	32	1.93
854350--854639	143	2.0	144	97	2	555	34	17	19	28	1.94
859622--859686	33	2.0	33	81	6	78	35	6	6	52	1.51
859682--859710	6	4.8	6	100	0	58	34	0	13	51	1.42
867016--867128	40	2.9	39	83	6	140	38	18	20	22	1.93
867019--867141	40	3.2	38	80	6	106	38	20	19	21	1.94
867176--867444	41	6.6	41	89	0	322	19	21	27	30	1.98
867907--867940	14	2.3	15	90	5	52	14	0	47	38	1.45
868996--869509	256	2.0	257	99	0	1021	24	15	17	42	1.88
872904--872951	19	2.4	20	86	10	71	72	10	14	2	1.19
896025--896152	45	2.8	45	87	0	166	37	14	24	23	1.93
896238--896391	27	5.7	27	72	3	121	33	16	29	20	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
902828--903008	27	6.7	27	82	5	197	29	14	27	28	1.96
902828--902948	26	4.6	26	80	7	109	30	14	24	30	1.94
902828--902975	79	1.9	80	89	1	235	30	14	25	29	1.95
903143--903362	27	8.2	27	72	7	142	43	10	22	23	1.84
903143--903363	54	4.1	54	77	3	185	43	10	22	23	1.84
903157--903366	81	2.6	80	87	2	296	44	11	22	21	1.84
907560--907589	15	1.9	16	93	6	53	6	20	6	66	1.38
908297--908344	18	2.7	18	87	6	62	50	0	0	50	1.00
909749--909785	4	9.2	4	100	0	74	48	0	0	51	1.00
912123--912170	24	2.0	24	100	0	96	41	12	8	37	1.73
922253--922339	45	1.9	45	85	0	120	39	2	13	44	1.57
922522--922659	21	6.6	21	71	3	80	18	23	15	42	1.89
922524--922644	42	2.9	42	84	0	161	19	24	15	40	1.90
935994--936036	20	2.2	20	100	0	86	20	13	30	34	1.92
941489--941519	16	1.9	16	93	0	53	48	3	0	48	1.17
947381--947437	11	4.9	11	77	10	51	42	3	10	43	1.56
950466--950534	36	1.9	36	85	5	95	30	13	24	31	1.93
963711--963750	16	2.5	16	91	0	62	40	7	2	50	1.44
963726--963785	22	2.8	21	89	5	84	45	1	1	51	1.21
965000--965044	22	2.0	22	86	0	63	33	4	4	57	1.38
972845--972888	24	1.9	22	86	9	61	38	31	13	15	1.87
986921--987076	85	1.8	85	84	5	217	31	16	24	27	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
986919--987104	28	6.6	28	75	10	130	31	16	24	27	1.97
987113--987197	27	3.1	27	70	6	73	34	18	22	24	1.96
994104--994130	14	1.9	14	100	0	54	22	7	3	66	1.33
1003579--1003650	20	3.6	20	73	14	67	59	1	2	36	1.20
1003585--1003683	40	2.5	40	86	1	137	61	2	2	34	1.19
1003579--1003654	9	7.5	10	69	19	50	57	1	2	38	1.21
1007274--1007322	18	2.8	17	78	9	53	10	4	14	71	1.27
1009393--1009551	45	3.6	44	79	7	153	36	27	13	22	1.91
1012232--1012309	26	2.9	27	77	9	81	25	24	15	34	1.95
1012295--1012427	53	2.5	53	80	8	153	28	23	13	34	1.93
1027331--1027390	30	2.0	29	84	9	77	33	10	5	51	1.57
1029918--1029947	15	2.1	15	93	6	53	53	0	10	36	1.35
1035325--1035845	126	4.1	127	85	3	660	29	15	17	38	1.90
1035325--1035845	251	2.1	253	85	2	708	29	15	17	38	1.90
1036016--1036047	7	4.6	7	100	0	64	62	37	0	0	0.95
1036405--1036651	110	2.2	110	86	5	334	26	2	18	51	1.60
1040240--1040416	25	7.2	25	70	7	96	34	22	23	19	1.97
1040240--1040368	25	5.2	25	73	9	97	33	21	24	20	1.97
1047934--1048129	25	7.8	25	77	10	127	34	21	24	19	1.96
1047924--1048014	25	3.7	25	83	1	112	29	25	24	20	1.99
1047934--1048112	50	3.6	50	79	8	152	33	21	25	20	1.97
1048034--1048129	51	1.9	50	83	10	124	36	21	23	17	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1048237--1048409	25	7.0	24	76	10	120	31	22	27	19	1.98
1048270--1048409	24	5.8	24	76	7	131	30	22	27	19	1.98
1048245--1048409	49	3.4	48	75	7	145	30	22	28	18	1.97
1048449--1048589	24	5.8	24	75	9	99	31	17	29	22	1.96
1049835--1049867	16	2.0	17	88	5	50	69	6	15	9	1.34
1056308--1056349	14	2.9	15	73	20	52	66	0	19	14	1.25
1058168--1058227	25	2.3	26	80	5	68	13	10	10	66	1.44
1058597--1058699	42	2.5	42	87	3	154	23	10	35	30	1.89
1090461--1090519	31	1.9	31	89	0	91	33	10	11	44	1.75
1090743--1090768	6	4.3	6	100	0	52	69	0	30	0	0.89
1092503--1092594	40	2.3	39	82	15	109	33	16	23	26	1.95
1092583--1092893	114	2.8	113	87	1	437	24	21	27	25	1.99
1092808--1093053	73	3.4	73	88	2	352	26	20	27	26	1.99
1093451--1093499	15	3.4	14	83	13	64	16	0	48	34	1.46
1093447--1093497	22	2.3	22	83	10	68	17	0	47	35	1.48
1093451--1093499	21	2.3	21	83	13	64	16	0	48	34	1.46
1093870--1093904	15	2.2	17	90	10	56	77	0	2	20	0.90
1094527--1094559	2	16.5	2	93	0	57	48	3	0	48	1.17
1094966--1095362	194	2.0	194	83	2	494	27	13	18	40	1.88
1096860--1097132	43	6.4	43	86	0	354	19	16	28	34	1.94
1097180--1097240	25	2.4	25	97	0	113	16	26	26	31	1.96
1097243--1097285	22	2.0	22	90	0	68	48	27	13	9	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1098640--1098685	18	2.3	21	85	10	62	23	2	2	71	1.08
1098640--1098685	10	4.7	10	76	13	51	23	2	2	71	1.08
1098701--1098745	19	2.3	20	88	11	76	40	0	4	55	1.20
1098701--1098751	19	2.7	19	87	0	75	41	0	3	54	1.19
1099504--1099540	11	3.0	13	76	15	51	45	16	29	8	1.76
1101214--1101244	15	2.1	15	93	0	53	48	29	0	22	1.51
1115078--1115126	20	2.5	20	77	12	64	46	20	24	8	1.77
1134239--1134280	14	2.9	15	79	13	52	52	19	14	14	1.75
1135998--1136091	46	2.0	46	95	0	170	34	22	19	24	1.97
1145250--1145298	20	2.5	20	86	6	64	38	22	28	10	1.87

Tables:   1   2   3   4   5