genome.fa.s810.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: scaffold159
Parameters: 2 7 7 80 10 50 1000
Length:  985711

Tables:   1   2   3   

This is table  1  of  3  ( 301 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4383--4452	30	2.3	31	87	7	99	31	24	10	34	1.88
5461--5522	23	2.6	25	82	10	83	37	30	4	27	1.78
17666--17706	17	2.5	16	84	7	55	41	21	7	29	1.80
28363--28406	19	2.3	19	84	7	54	9	15	2	72	1.19
28450--28498	24	2.0	24	100	0	98	48	16	12	22	1.79
28842--28880	10	4.0	10	86	6	53	12	10	2	74	1.17
28844--28889	10	4.8	10	84	7	51	13	13	2	71	1.23
28844--28880	19	1.9	19	94	0	65	13	10	2	72	1.21
28844--28889	19	2.4	19	85	7	58	13	13	2	71	1.23
31092--31128	9	4.1	9	85	0	56	48	13	8	29	1.71
31177--31237	30	2.0	31	93	3	106	19	42	0	37	1.52
31228--31262	17	2.0	18	94	5	63	11	65	0	22	1.24
31359--31417	29	2.0	31	83	6	77	18	37	0	44	1.50
32742--32778	16	2.3	16	86	13	58	40	0	0	59	0.97
32856--32887	13	2.4	14	85	15	50	43	0	0	56	0.99
52564--52629	34	1.9	34	81	0	78	37	25	15	21	1.92
54431--54496	34	1.9	34	81	0	78	37	25	15	21	1.92
61891--61938	18	2.7	18	81	12	62	31	18	25	25	1.98
64817--65044	95	2.4	96	87	5	313	38	2	18	39	1.65
65077--65490	126	3.3	126	92	1	679	33	17	21	26	1.96
65694--66074	190	2.0	191	99	0	755	32	16	19	32	1.94
68978--69017	21	1.9	21	85	10	55	5	20	45	30	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69280--69322	18	2.4	18	84	0	50	44	9	25	20	1.81
70540--70586	20	2.3	20	88	0	67	25	31	17	25	1.97
72403--72456	11	5.0	10	85	14	72	48	0	29	22	1.51
83301--83347	18	2.6	18	76	6	51	31	0	6	61	1.21
87180--87225	8	6.0	8	82	7	51	23	36	0	39	1.55
87184--87232	23	2.1	23	85	7	64	22	34	0	42	1.54
87200--87232	12	2.8	12	86	4	50	21	30	0	48	1.50
87415--87454	21	1.9	21	84	0	53	12	15	5	67	1.38
103465--103518	27	2.0	27	100	0	108	22	18	22	37	1.95
106501--106536	16	2.2	16	95	0	63	22	38	5	33	1.77
106661--106928	41	6.6	41	88	0	376	20	29	16	33	1.95
106803--106909	20	5.2	20	66	12	65	17	32	15	33	1.92
106665--106928	123	2.2	123	91	0	422	20	29	16	32	1.95
119683--119726	23	2.0	23	86	4	63	27	4	0	68	1.09
119945--120029	18	4.6	18	66	20	50	36	0	3	60	1.14
119968--120044	37	2.1	38	97	2	147	38	0	6	54	1.26
121376--121417	21	2.0	21	90	9	68	47	11	7	33	1.68
121523--121555	17	1.9	17	88	11	50	30	9	6	54	1.56
121747--121811	29	2.3	28	84	5	85	26	7	18	47	1.75
123791--123836	8	5.8	8	82	10	58	10	0	34	54	1.36
129668--129713	17	2.7	17	89	0	74	78	4	2	15	1.01
131087--131951	50	17.5	48	69	8	433	21	20	25	32	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
131032--131962	100	9.4	100	86	3	1163	21	20	25	32	1.98
131032--131962	199	4.7	199	87	4	1183	21	20	25	32	1.98
144269--144307	18	2.2	17	90	4	60	74	5	5	15	1.17
144682--144749	29	2.5	27	78	19	70	64	4	5	25	1.35
145469--145515	19	2.6	18	83	9	60	76	2	12	8	1.09
146560--146590	16	1.9	16	100	0	62	38	0	32	29	1.57
146561--146597	16	2.3	16	90	0	56	40	2	29	27	1.70
146579--146671	44	2.1	44	88	9	136	33	4	26	35	1.76
148656--148781	49	2.7	48	84	7	163	50	10	7	31	1.65
150897--150959	18	3.8	18	76	23	84	60	0	0	39	0.97
150897--150964	30	2.2	31	94	2	120	58	0	0	41	0.98
156573--156620	20	2.4	21	82	6	55	37	0	14	47	1.44
162858--162954	34	3.1	32	85	7	92	40	1	0	58	1.05
162894--162955	17	3.5	19	74	17	69	35	1	0	62	1.05
166352--166403	23	2.3	23	93	0	86	34	17	17	30	1.93
168672--168725	25	2.3	25	81	18	71	55	5	3	35	1.41
173520--173577	21	2.6	23	74	23	68	27	20	10	41	1.85
179453--179579	59	2.1	60	83	1	157	42	11	4	40	1.62
191800--191893	45	2.1	45	91	0	152	30	23	19	26	1.98
193658--193692	17	1.9	19	88	11	56	77	8	5	8	1.13
196892--196961	30	2.3	30	78	9	72	41	0	2	55	1.14
202782--202881	50	2.0	50	94	0	173	40	15	2	43	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
209856--210169	160	2.0	160	93	0	538	33	18	14	33	1.91
219320--219367	25	2.0	25	84	12	64	60	2	2	35	1.20
221602--221741	75	1.9	75	89	3	219	47	7	12	32	1.69
228152--228181	2	15.0	2	92	0	51	50	3	0	46	1.18
231070--231134	24	2.7	24	85	4	78	38	7	40	13	1.74
231070--231150	24	3.4	24	79	3	74	40	6	38	14	1.71
233334--233400	29	2.4	28	78	14	84	13	8	31	46	1.74
235274--235319	18	2.6	18	89	0	65	23	41	10	23	1.86
245703--245738	16	2.2	17	90	5	56	11	52	0	36	1.37
247453--247523	35	2.0	35	100	0	142	23	2	30	42	1.69
249901--249977	24	3.2	24	79	3	75	40	6	38	14	1.72
252089--252153	29	2.3	27	75	15	69	12	10	30	46	1.76
258712--258760	23	2.1	23	88	0	71	30	26	20	22	1.98
258851--258886	8	4.5	8	85	0	54	36	27	8	27	1.86
259006--259044	18	2.2	17	86	13	53	46	20	0	33	1.51
263212--263246	17	2.1	16	89	5	52	42	0	2	54	1.15
263863--263903	19	2.2	19	95	0	73	51	17	0	31	1.46
263920--263995	27	2.8	27	93	0	134	22	38	22	17	1.93
272718--272754	20	2.0	19	85	15	51	40	21	0	37	1.54
276785--276831	19	2.5	18	80	16	51	51	0	0	48	1.00
297843--297878	15	2.3	16	90	4	56	66	2	0	30	1.06
302453--302613	54	3.0	53	78	5	180	24	32	16	26	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
303523--303586	32	2.0	32	82	14	78	28	25	0	46	1.53
304709--304745	13	2.8	13	84	15	58	2	18	0	78	0.87
310423--310528	25	4.2	25	68	9	72	22	23	16	36	1.94
310427--310566	75	1.9	75	81	3	174	24	20	19	36	1.95
316637--316671	18	1.9	18	88	11	54	28	11	2	57	1.48
319885--319919	18	1.9	18	88	0	52	25	34	8	31	1.86
320334--320392	25	2.3	26	88	2	84	52	1	8	37	1.42
320388--320437	18	2.8	18	90	0	73	48	20	0	32	1.50
320428--320499	34	2.1	35	86	2	101	44	29	0	26	1.55
320468--320518	18	2.4	23	69	30	67	47	29	0	23	1.52
320476--320517	18	2.3	18	100	0	84	47	26	0	26	1.52
320788--320812	10	2.5	10	100	0	50	44	8	0	48	1.32
323859--324207	124	2.8	124	93	1	603	30	21	17	30	1.96
324425--324486	29	2.2	28	82	8	72	50	17	11	20	1.77
327747--327780	14	2.3	15	90	5	52	55	11	20	11	1.67
328094--328140	24	2.0	23	84	12	60	31	0	2	65	1.04
333127--333201	21	3.4	21	87	5	96	54	12	20	13	1.70
333602--333630	2	14.5	2	100	0	58	51	48	0	0	1.00
336360--336467	54	2.0	54	87	0	153	32	12	27	27	1.92
339749--339827	20	4.0	20	83	0	104	44	22	26	6	1.77
342431--342542	50	2.2	52	87	3	165	38	14	14	33	1.86
342479--342677	85	2.4	83	87	5	285	41	13	14	30	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
342509--342679	85	2.0	85	98	0	333	41	13	15	29	1.85
347988--348024	17	2.2	17	95	0	65	27	27	18	27	1.98
347938--348074	67	2.0	67	94	0	238	27	22	27	22	1.99
348005--348135	50	2.6	50	90	0	199	25	23	29	21	1.99
356209--356255	23	2.0	23	91	0	76	42	4	10	42	1.59
356311--356349	19	2.2	18	86	9	53	74	2	12	10	1.17
361369--361433	31	2.1	31	94	5	114	47	12	9	30	1.72
388644--388712	24	2.8	24	78	10	79	50	10	5	33	1.60
389532--389556	13	1.9	13	100	0	50	80	0	20	0	0.72
390272--390414	44	3.2	44	68	11	121	23	27	20	27	1.99

Tables:   1   2   3