genome.fa.s810.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: scaffold159
Parameters: 2 7 7 80 10 50 1000
Length:  985711

Tables:   1   2   3   

This is table  3  of  3  ( 301 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
803377--803620	83	3.0	83	84	5	318	33	26	19	20	1.96
803377--803618	41	5.9	42	87	4	300	33	26	19	20	1.97
808659--808737	40	2.0	40	87	0	113	37	22	17	21	1.94
808827--808984	41	3.9	41	82	4	149	20	21	29	28	1.98
809377--809410	14	2.4	14	90	9	52	26	0	38	35	1.57
811260--811299	16	2.5	16	95	0	71	37	7	27	27	1.84
811281--811373	44	2.1	44	90	6	143	34	4	24	36	1.75
817186--817457	150	1.8	151	98	0	528	28	11	7	52	1.64
821052--821121	17	3.7	17	68	23	50	34	1	5	58	1.31
821052--821138	41	2.2	40	87	6	122	33	1	5	59	1.28
822682--822711	15	1.9	16	93	6	53	13	3	3	80	0.97
823499--823555	27	2.1	27	86	0	78	26	38	19	15	1.92
823554--823590	6	6.2	6	90	9	58	16	70	0	13	1.17
827456--827620	62	2.6	64	81	6	194	33	7	11	47	1.67
827483--827619	65	2.0	69	83	9	176	32	6	11	48	1.65
829993--830045	26	2.0	26	82	13	65	66	15	1	16	1.35
830711--830737	14	1.9	14	100	0	54	11	14	0	74	1.08
832864--832904	21	2.0	21	85	0	55	43	4	26	24	1.74
833763--833811	20	2.5	20	86	0	62	57	4	6	32	1.42
837403--837485	27	3.1	27	76	0	85	37	12	26	24	1.90
842399--842689	50	5.7	50	85	4	316	26	19	30	22	1.98
842405--842696	150	1.9	154	83	5	387	26	20	30	22	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
848410--848697	50	5.7	50	88	4	373	25	19	31	23	1.98
848409--848691	148	1.9	152	86	5	412	25	19	31	23	1.98
848415--848755	98	3.4	98	83	4	313	25	19	30	24	1.98
851420--851463	22	2.0	22	90	0	70	40	6	11	40	1.68
861567--861600	11	3.2	11	87	8	52	64	14	11	8	1.49
864133--864218	46	1.9	44	85	4	118	24	19	22	33	1.97
867109--867147	17	2.2	18	86	4	53	25	2	20	51	1.60
869003--869554	2	276.0	2	99	0	1095	49	50	0	0	1.02
870410--870479	29	2.3	31	85	4	90	24	12	14	48	1.78
870866--870973	55	2.0	55	100	0	216	33	12	22	32	1.91
879506--879557	23	2.2	23	89	6	77	26	0	9	63	1.25
879515--879563	23	2.3	22	82	10	66	30	0	12	57	1.36
882064--882111	25	1.9	25	86	0	69	8	0	14	77	0.99
885514--885600	23	3.8	23	82	0	93	17	12	25	44	1.83
905345--905435	45	2.0	45	91	0	146	43	10	28	16	1.82
909547--909608	26	2.4	26	88	0	88	35	12	11	40	1.80
919870--919901	15	2.1	15	100	0	64	31	21	28	18	1.97
921325--921364	7	5.9	7	91	5	64	15	7	0	77	0.98
921325--921365	20	2.0	21	95	4	75	14	7	0	78	0.96
921332--921372	20	2.0	20	90	0	64	14	4	4	75	1.14
921325--921378	27	2.0	28	85	10	76	16	5	3	74	1.16
922976--923027	25	2.1	25	88	0	77	32	21	7	38	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
923814--924000	46	4.1	46	99	0	367	49	14	14	20	1.79
928114--928144	5	6.0	5	96	3	53	19	0	0	80	0.71
928978--929008	16	2.0	16	93	6	55	54	12	19	12	1.70
931096--931176	26	3.2	26	65	28	73	22	14	29	33	1.94
931178--931262	46	1.9	43	85	7	116	23	14	27	35	1.93
931400--931431	16	2.0	16	93	0	55	59	0	15	25	1.36
934773--934819	19	2.6	18	87	12	69	23	4	2	70	1.16
934770--934830	19	3.2	20	81	11	65	26	3	3	67	1.22
937574--937624	22	2.3	23	83	10	61	47	15	15	21	1.83
941385--941413	5	5.8	5	100	0	58	0	17	0	82	0.66
945123--945167	19	2.4	19	82	10	56	60	15	6	17	1.56
946681--946757	38	2.0	39	94	5	138	32	14	6	46	1.70
963706--963734	9	3.0	10	90	10	51	51	6	0	41	1.28
963780--963838	27	2.1	28	84	3	75	22	3	20	54	1.59
969759--969904	50	2.9	50	82	0	175	23	28	21	26	1.99
976092--976289	50	3.8	50	78	4	162	23	27	22	27	1.99
979426--979462	18	2.0	19	89	5	58	51	0	43	5	1.24

Tables:   1   2   3

The End!