genome.fa.s818.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: scaffold374
Parameters: 2 7 7 80 10 50 1000
Length:  633698

Tables:   1   2   3   

This is table  2  of  3  ( 265 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
259352--259388	19	1.9	19	94	0	65	27	10	2	59	1.44
259586--259795	43	4.8	43	81	3	224	27	18	30	24	1.98
270709--270747	18	2.2	18	86	13	55	25	2	2	69	1.14
270753--270816	19	3.2	19	76	14	58	43	0	4	51	1.22
270893--270931	18	2.2	18	90	0	60	30	7	7	53	1.57
273863--274181	40	8.0	40	81	2	347	30	22	15	32	1.94
273864--274175	120	2.6	120	84	2	387	30	22	15	31	1.95
283154--283240	27	3.2	27	83	0	111	13	22	34	28	1.93
283231--283283	25	2.1	25	92	0	88	15	15	39	30	1.87
283379--283421	19	2.3	18	80	11	52	27	18	25	27	1.98
284170--284213	18	2.4	18	81	7	54	25	29	15	29	1.96
284379--284591	68	3.1	68	86	0	282	25	12	21	40	1.88
286168--286301	37	3.6	37	84	3	173	38	29	14	17	1.90
296185--296247	21	3.3	21	66	25	66	22	17	15	44	1.86
296180--296254	36	2.1	36	100	0	150	25	16	13	45	1.83
297068--297172	45	2.3	45	80	3	113	41	16	17	24	1.89
297377--297484	40	2.7	40	84	5	121	40	20	6	32	1.78
298165--298222	17	3.5	16	86	6	71	0	29	0	70	0.87
298544--298604	24	2.5	23	80	15	61	49	4	0	45	1.23
298552--298631	35	2.3	35	85	8	103	50	5	0	45	1.23
304639--304735	45	2.3	39	73	18	104	43	15	16	24	1.87
305306--305366	24	2.5	23	80	15	61	49	4	0	45	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
305314--305393	35	2.3	35	85	8	103	50	5	0	45	1.23
305469--305750	145	1.9	147	91	5	460	36	17	3	43	1.65
312852--312887	17	2.2	16	90	5	54	25	16	0	58	1.38
317396--317423	14	2.0	14	100	0	56	42	7	0	50	1.30
318611--318651	21	1.9	22	85	14	59	36	4	9	48	1.58
328330--328447	50	2.3	50	86	5	157	33	17	13	35	1.89
330791--330834	12	3.8	12	84	3	54	72	2	20	4	1.13
334222--334284	20	3.2	19	77	8	72	9	26	20	42	1.83
341062--341143	25	3.3	25	82	0	110	40	36	9	13	1.78
359013--359045	13	2.6	13	85	4	50	72	0	3	24	0.98
360147--360181	16	2.1	17	94	5	63	80	0	5	14	0.89
361067--361776	44	16.7	41	69	12	246	25	22	21	30	1.99
361068--361297	123	1.8	127	87	3	351	25	21	22	30	1.98
361145--361774	44	14.7	44	73	6	393	25	23	20	30	1.98
361145--361643	87	5.8	87	76	5	390	25	23	20	30	1.99
361267--361518	131	1.9	130	85	2	344	25	23	19	30	1.98
361147--361692	174	3.2	173	85	4	662	25	23	20	30	1.99
362985--363017	7	4.7	7	92	0	57	12	9	0	78	0.95
362984--363018	14	2.4	15	95	4	63	11	8	0	80	0.92
363994--364050	29	2.2	26	84	15	73	12	1	8	77	1.07
363994--364070	23	3.3	23	76	10	68	11	6	7	74	1.23
369085--369114	14	2.1	14	93	0	51	80	0	10	10	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
373892--373930	19	2.1	19	95	0	69	0	46	10	43	1.37
379312--379365	16	3.4	16	89	0	72	31	31	0	37	1.58
382499--382683	101	1.8	101	91	5	311	23	18	28	30	1.97
382499--382681	51	3.6	50	79	10	169	23	18	27	30	1.98
388036--388069	12	2.9	12	95	4	61	26	17	0	55	1.42
388039--388079	15	3.1	13	89	10	57	24	17	0	58	1.38
390017--390081	27	2.4	27	76	0	67	26	23	10	40	1.87
390165--390218	27	2.0	27	85	10	74	35	22	12	29	1.91
396481--396527	15	3.2	14	80	14	51	87	8	0	4	0.67
396484--396513	8	3.6	8	95	4	51	86	10	0	3	0.67
396495--396573	20	3.5	23	75	21	60	79	6	10	3	1.03
407393--407456	30	2.1	30	82	5	76	34	20	18	26	1.96
407405--407567	30	4.9	35	66	23	93	33	16	22	28	1.95
407405--407580	66	2.7	66	80	3	212	34	15	22	27	1.95
409064--409330	133	2.0	133	99	0	525	46	13	8	30	1.74
437358--437454	27	3.6	27	91	0	158	38	20	19	21	1.94
437358--437695	54	6.1	55	81	8	355	41	21	17	20	1.90
437458--437696	27	8.9	27	83	1	282	42	21	16	19	1.89
438629--438683	28	2.0	28	92	7	94	25	23	25	25	2.00
438780--438850	26	2.7	26	84	0	88	40	23	21	14	1.89
439019--439278	27	9.7	25	75	13	117	22	18	20	38	1.93
439030--439278	54	4.6	53	83	5	268	21	19	20	38	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
439114--439258	53	2.7	54	91	2	229	24	22	15	38	1.92
439057--439258	80	2.5	80	85	2	262	23	20	17	38	1.93
441245--441331	43	2.0	43	95	0	156	20	42	20	16	1.89
445456--445511	28	2.0	28	89	6	87	26	17	25	30	1.97
445627--445697	26	2.7	26	80	0	79	39	19	19	21	1.93
445874--446209	27	12.5	27	86	3	340	22	19	16	40	1.91
445901--446209	81	3.8	79	83	3	386	22	20	16	40	1.91
459405--459447	20	2.2	19	87	4	59	76	9	2	11	1.10
467782--467858	25	2.9	27	83	9	88	28	22	19	29	1.98
470927--470969	22	2.0	22	100	0	86	39	4	13	41	1.66
486595--486727	39	3.4	39	82	0	167	13	28	20	37	1.90
492030--492146	54	2.2	54	85	0	171	24	21	33	20	1.97
497651--497743	44	2.1	44	86	6	125	33	3	27	35	1.73
504959--505051	41	2.3	41	90	0	141	40	24	16	18	1.90
510140--510188	7	6.8	8	80	17	54	24	0	0	75	0.80
510140--510181	14	3.1	14	83	16	61	21	0	0	78	0.75
510140--510181	21	2.0	21	90	9	68	21	0	0	78	0.75
510673--510712	13	3.1	13	86	10	55	35	7	7	50	1.59
513516--514390	220	4.0	220	96	1	1625	28	16	18	36	1.93
513516--514390	436	2.0	437	96	1	1619	28	16	18	36	1.93
532810--532906	28	3.4	28	81	8	115	29	21	23	24	1.99
533011--533087	26	3.0	26	82	0	91	38	22	20	18	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
533262--533707	27	16.7	26	75	15	235	19	20	17	42	1.90
533262--533703	54	8.2	54	80	4	457	19	20	17	42	1.90
533250--533703	81	5.6	81	81	5	460	20	20	18	41	1.90
537011--537053	13	3.3	13	81	18	54	51	18	13	16	1.77
537577--537611	17	2.0	17	88	5	52	14	45	28	11	1.79
538633--538702	35	2.0	36	83	5	90	44	14	10	31	1.78
540004--540044	18	2.3	18	91	0	64	9	12	4	73	1.24
541278--541340	28	2.3	28	91	2	101	34	12	3	49	1.57
549450--549483	17	1.9	18	94	5	61	52	0	5	41	1.25
553511--553583	13	5.7	13	86	1	85	30	9	23	36	1.87
556727--556784	25	2.3	26	82	11	68	48	5	1	44	1.35
559046--559088	18	2.6	16	77	7	50	25	18	4	51	1.66
561775--561825	14	3.4	14	80	15	57	49	1	1	47	1.24
561764--561832	17	4.4	16	74	17	56	49	1	1	47	1.19
563406--563456	14	3.4	14	80	15	57	49	1	1	47	1.24
563385--563463	16	5.0	16	72	20	60	48	1	1	49	1.17
564043--564087	22	2.2	20	92	8	72	37	4	4	53	1.41
565588--565716	60	2.2	60	82	0	159	32	20	10	36	1.86
571161--571193	15	2.1	16	88	5	50	24	15	0	60	1.35
582294--582326	7	4.7	7	92	0	57	84	0	15	0	0.61
583519--583604	45	1.9	45	82	0	109	31	18	23	26	1.97
584657--584693	15	2.4	16	90	4	58	21	13	0	64	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
586408--586524	62	1.9	62	82	5	150	50	3	4	41	1.38
588973--589116	51	2.8	51	78	3	157	23	17	28	30	1.97
590367--590400	13	2.6	13	95	0	59	8	14	35	41	1.77
591413--591493	25	3.3	25	70	13	87	35	4	3	55	1.39
591399--591496	48	2.0	49	98	2	189	32	4	6	57	1.42
592905--592950	7	6.0	7	81	18	56	54	4	2	39	1.32
592897--592933	15	2.5	15	90	0	56	54	0	0	45	1.00
592905--592976	32	2.2	32	80	0	81	54	4	1	40	1.28
594407--594520	60	1.9	60	87	0	165	18	14	28	38	1.90
594429--594520	22	4.5	22	72	15	79	18	15	30	35	1.92

Tables:   1   2   3