Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: scaffold374
Parameters: 2 7 7 80 10 50 1000
Length:  633698

Tables:   1   2   3   

This is table  3  of  3  ( 265 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
596357--596397
19
2.1
20
86
4
57
31
9
2
56
1.45
596811--596871
26
2.7
21
68
22
50
4
21
3
70
1.21
596894--596968
37
2.3
34
80
17
79
41
4
2
52
1.34
600555--600600
20
2.2
20
80
3
56
41
17
0
41
1.49
601763--601803
19
2.1
19
86
4
55
31
9
0
58
1.31
602207--602256
17
2.7
19
82
11
61
0
28
0
72
0.86
604344--604405
26
2.3
26
86
2
79
61
4
12
20
1.50
604359--604412
26
2.1
26
96
0
99
55
3
12
27
1.54
605555--605659
8
11.7
9
69
17
58
55
4
0
40
1.21
612128--612165
20
2.0
20
89
5
60
57
7
2
31
1.41
613027--613138
40
2.8
40
77
5
120
37
22
20
19
1.94
613198--613357
41
3.9
41
90
0
230
24
23
23
28
1.99
615266--615531
133
2.0
134
89
5
414
38
13
13
34
1.84
615543--615589
22
2.1
22
84
0
58
23
51
0
25
1.49
619077--619368
43
6.8
43
82
6
281
22
18
29
28
1.98
619077--619368
129
2.3
127
81
7
320
22
18
29
28
1.98
623361--623731
42
8.8
42
91
3
595
21
21
21
35
1.96
624050--624101
21
2.5
21
87
6
70
3
44
21
30
1.70
627067--627524
229
2.0
229
96
0
837
32
21
20
25
1.98
628561--628633
16
4.4
17
80
13
73
30
4
16
49
1.64
628559--628639
25
3.2
25
96
0
153
30
3
17
48
1.64
628559--628724
9
19.2
9
75
12
134
31
3
18
45
1.67
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
631092--631517
198
2.2
198
90
0
665
35
20
15
28
1.93
632763--633310
114
4.8
114
82
5
624
32
25
20
21
1.98
632764--633314
229
2.4
228
88
3
786
31
26
20
21
1.98

Tables:   1   2   3

The End!