genome.fa.s14.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_018397267.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_204.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  6982396

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   

This is table  1  of  12  ( 1406 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2745--2771	2	13.5	2	100	0	54	51	0	0	48	1.00
2771--2796	2	13.0	2	100	0	52	50	0	50	0	1.00
9263--9287	13	1.9	13	100	0	50	48	40	4	8	1.51
9296--9339	6	7.0	6	80	10	52	34	47	13	4	1.63
9294--9339	19	2.4	19	88	0	65	32	47	13	6	1.68
9296--9476	7	27.0	7	69	15	73	28	51	12	7	1.66
9296--9478	13	13.7	13	66	18	58	28	51	13	7	1.66
9325--9476	20	7.4	20	70	16	89	26	53	12	7	1.64
9426--9495	33	2.1	34	83	2	88	30	45	14	10	1.77
9657--9733	21	3.8	21	76	5	61	32	2	6	58	1.37
25088--25130	22	2.0	22	95	0	77	37	9	27	25	1.87
26662--26705	17	2.6	17	85	7	54	47	2	2	47	1.27
27516--27548	6	5.5	6	100	0	66	18	66	15	0	1.25
39918--40357	220	2.0	219	97	0	835	25	16	16	41	1.89
51385--51443	29	2.0	29	100	0	118	27	23	16	32	1.96
59201--59241	2	20.5	2	100	0	82	51	0	0	48	1.00
59520--59545	13	2.0	13	100	0	52	76	7	0	15	0.99
66468--66498	16	1.9	16	93	0	53	83	0	12	3	0.75
68112--68152	7	5.9	7	100	0	82	0	26	29	43	1.55
96206--96231	2	13.0	2	100	0	52	0	50	0	50	1.00
96231--96260	2	15.0	2	100	0	60	50	0	0	50	1.00
113794--113829	2	18.0	2	88	0	54	44	0	5	50	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
115592--115630	2	19.5	2	83	0	51	43	7	0	48	1.31
115592--115630	12	3.2	12	88	0	60	43	7	0	48	1.31
117522--117553	2	16.0	2	100	0	64	50	0	0	50	1.00
117995--118020	6	4.3	6	100	0	52	0	34	0	65	0.93
128228--128373	43	3.4	43	98	0	274	33	6	28	30	1.83
128231--128351	29	4.2	28	67	12	75	28	7	30	33	1.85
128228--128374	14	10.3	14	66	4	87	34	6	28	30	1.83
129723--129772	20	2.5	20	96	3	93	58	10	16	16	1.63
162145--162172	5	5.6	5	100	0	56	17	0	0	82	0.68
175871--175939	28	2.4	28	81	9	86	34	1	0	63	1.03
185408--185461	5	11.0	5	79	15	51	16	3	0	79	0.87
193418--193448	16	1.9	16	93	0	53	51	16	12	19	1.76
208011--208049	4	9.8	4	100	0	78	51	23	0	25	1.49
211705--211750	12	3.8	12	82	8	58	0	36	0	63	0.95
211701--211758	27	2.2	26	78	6	64	1	39	0	58	1.08
213818--213884	27	2.5	25	77	13	62	1	34	4	59	1.26
215421--215449	5	6.0	5	96	4	51	82	0	17	0	0.66
221293--221381	30	3.0	30	90	3	135	52	23	17	5	1.66
221330--221467	47	2.9	48	83	4	190	47	24	21	6	1.74
221466--221537	6	12.2	6	86	8	103	16	63	18	1	1.38
223215--223241	7	3.9	7	100	0	54	25	0	44	29	1.54
225343--225407	18	3.6	18	97	0	121	44	40	4	10	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
225398--225575	87	2.0	87	92	2	295	17	30	21	29	1.96
226248--226290	21	2.0	21	86	8	61	37	0	4	58	1.19
229404--229637	117	2.0	117	100	0	468	36	17	17	28	1.93
231577--231617	14	3.1	14	77	22	52	56	4	39	0	1.21
234775--234814	3	13.3	3	83	0	53	67	27	5	0	1.11
249166--249195	2	15.0	2	100	0	60	50	0	0	50	1.00
249997--250033	2	18.5	2	88	0	56	48	5	0	45	1.25
258712--258790	39	2.0	39	87	0	113	25	17	30	26	1.97
267020--267052	2	16.5	2	100	0	66	51	0	0	48	1.00
281574--281601	2	14.0	2	100	0	56	0	0	50	50	1.00
297311--297348	18	2.1	18	90	9	60	44	5	0	50	1.24
308036--308072	2	19.0	2	94	5	67	51	0	0	48	1.00
320735--320796	2	30.0	2	85	6	79	3	43	4	48	1.40
345182--345225	23	2.0	22	81	4	52	43	0	4	52	1.22
345290--345381	43	2.1	43	84	8	114	46	4	1	47	1.29
345545--345579	18	1.9	18	88	11	54	28	11	0	60	1.32
345926--345972	23	2.0	24	88	12	71	51	0	6	42	1.27
345994--346061	22	3.1	21	69	12	57	44	4	0	51	1.21
346142--346241	45	2.2	45	87	0	137	46	5	1	48	1.31
348212--348241	6	5.0	6	100	0	60	33	0	0	66	0.92
353675--353703	15	1.9	15	100	0	58	37	6	20	34	1.80
364105--364166	27	2.3	27	100	0	124	29	17	33	19	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
379138--379254	47	2.5	47	85	2	155	41	18	17	21	1.90
380649--380687	16	2.4	17	82	4	53	33	2	0	64	1.08
398907--398988	2	41.5	2	80	7	96	0	45	3	51	1.19
414179--414665	243	2.0	243	88	2	728	36	8	8	47	1.64
414927--414978	22	2.3	22	80	9	61	48	0	0	51	1.00
454622--454651	15	2.0	15	93	0	51	63	26	3	6	1.35
476130--476182	22	2.4	21	81	12	63	66	0	0	33	0.92
484043--484077	18	1.9	18	94	0	61	28	25	14	31	1.95
500984--501008	4	6.2	4	100	0	50	48	0	0	52	1.00
514878--514946	33	2.2	32	84	5	86	30	7	7	55	1.55
515506--515547	22	1.9	22	100	0	84	23	14	19	42	1.87
517801--517836	5	7.2	5	87	0	54	0	25	0	75	0.81
518153--518193	3	13.7	3	85	10	57	0	63	0	36	0.95
518161--518206	12	3.8	12	82	0	56	0	60	0	39	0.97
524876--524917	15	3.1	14	80	12	52	30	0	0	69	0.89
527797--527821	7	3.6	7	100	0	50	12	12	60	16	1.60
537668--537736	24	2.7	27	84	13	108	30	40	0	28	1.57
537677--537733	24	2.4	24	100	0	114	29	38	0	31	1.58
545700--545872	85	2.0	86	92	1	285	33	19	19	27	1.96
556968--556997	2	15.0	2	92	0	51	53	0	0	46	1.00
560510--560550	3	13.7	3	94	0	73	0	2	63	34	1.08
573162--573188	12	2.2	12	100	0	54	66	0	33	0	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
581600--581702	33	3.1	33	68	13	84	37	2	15	43	1.62
581586--581897	67	4.6	68	82	4	353	39	2	12	45	1.56
581720--581757	20	1.9	20	88	0	58	50	0	5	44	1.24
581971--582053	40	2.0	42	88	4	125	36	21	28	13	1.91
583866--583908	21	2.0	21	86	8	61	11	6	4	76	1.13
587866--587890	2	12.5	2	100	0	50	0	52	0	48	1.00
595368--595396	5	5.8	5	100	0	58	79	0	20	0	0.74
596586--596626	3	13.7	3	84	0	55	29	39	0	31	1.57
602934--602990	28	2.1	29	83	9	75	45	5	5	43	1.49
624707--624736	14	2.1	14	93	0	51	33	20	30	16	1.94
660218--660516	115	2.6	113	82	5	354	36	10	14	39	1.79
687470--687873	202	2.0	202	93	0	682	37	15	17	28	1.91
706875--706974	52	1.9	52	83	4	130	51	13	5	31	1.62
707514--707562	21	2.4	21	80	10	57	67	2	2	28	1.13
724743--724792	25	2.0	25	96	0	91	36	10	6	48	1.61
727340--727389	22	2.3	22	89	6	75	50	16	20	14	1.78
742996--743039	19	2.4	18	81	7	54	40	0	2	56	1.11
760980--761009	15	2.0	15	100	0	60	80	0	6	13	0.91
762493--762585	39	2.4	39	92	3	161	19	37	12	30	1.89
788767--789282	264	2.0	264	92	0	852	32	23	17	26	1.96
789362--789582	113	2.0	113	93	0	379	34	28	14	21	1.93
813319--813377	24	2.6	23	83	5	66	66	1	3	28	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
821648--821892	63	3.9	63	86	3	341	32	26	20	20	1.97
823121--823147	2	13.5	2	100	0	54	51	0	48	0	1.00
851189--851226	6	6.3	6	100	0	76	68	15	15	0	1.22
862937--862986	22	2.3	21	82	6	55	56	0	2	42	1.11
874592--874633	18	2.3	18	87	0	57	9	52	2	35	1.47
876446--877007	209	2.7	208	91	1	903	39	11	14	34	1.81
884176--884201	2	13.0	2	100	0	52	50	50	0	0	1.00
904739--904766	2	14.0	2	100	0	56	50	0	0	50	1.00
905824--905871	25	1.9	25	91	0	78	68	18	6	6	1.32
909389--909417	13	2.2	13	100	0	58	62	0	0	37	0.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12