genome.fa.s14.2.7.7.80.10.50.1000.12.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_018397267.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_204.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  6982396

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   

This is table  12  of  12  ( 1406 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6708643--6708733	41	2.2	41	92	0	146	43	4	3	48	1.39
6708780--6708837	29	2.0	29	83	6	73	44	1	1	51	1.21
6709019--6709068	14	3.5	13	80	20	55	16	4	2	78	1.00
6709074--6709133	17	3.6	16	74	19	52	46	1	0	51	1.10
6718644--6718693	25	2.0	25	92	0	82	20	14	28	38	1.91
6718868--6719012	73	2.0	73	81	0	173	35	13	14	36	1.85
6720172--6720227	8	7.0	8	75	15	53	50	0	0	50	1.00
6727986--6728143	28	5.4	28	75	13	133	42	8	8	40	1.66
6727983--6728142	59	2.8	58	83	6	209	43	8	8	40	1.65
6727983--6728154	29	5.9	28	78	11	175	44	8	8	37	1.66
6729228--6729307	27	2.9	27	79	3	70	27	25	16	31	1.96
6730016--6730158	58	2.4	59	80	1	171	46	20	11	20	1.82
6744669--6744712	2	22.0	2	90	9	72	47	2	0	50	1.13
6756264--6756297	2	17.0	2	100	0	68	50	0	0	50	1.00
6773736--6773775	21	1.9	21	94	0	71	35	10	5	50	1.58
6782502--6782527	12	2.2	12	100	0	52	34	0	11	53	1.37
6783205--6783293	45	2.0	46	93	2	153	30	8	33	26	1.87
6785223--6785267	19	2.5	18	85	7	56	15	4	6	73	1.21
6785232--6785269	18	2.1	19	85	5	51	18	5	7	68	1.34
6787811--6787848	19	2.0	20	84	5	51	50	0	10	39	1.37
6787762--6788028	135	2.0	136	83	3	342	47	9	8	33	1.67
6793934--6793981	24	2.0	24	100	0	96	41	16	20	20	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6803679--6803733	2	27.5	2	100	0	110	49	0	0	50	1.00
6804819--6804843	4	6.2	4	100	0	50	48	0	0	52	1.00
6809573--6809657	45	1.9	44	90	2	134	32	2	0	64	1.06
6812168--6812202	2	17.5	2	100	0	70	51	0	0	48	1.00
6814018--6814213	98	2.0	98	89	4	297	51	10	8	29	1.66
6816739--6816816	35	2.3	35	82	6	97	29	0	12	57	1.36
6817788--6817845	17	3.7	16	80	19	77	55	0	5	39	1.22
6817788--6817854	30	2.2	30	97	0	125	53	0	4	41	1.21
6817788--6817861	17	5.2	13	79	20	69	51	0	4	44	1.20
6817957--6818099	75	1.9	76	88	4	218	41	11	11	34	1.77
6820966--6820998	14	2.3	15	89	5	50	48	0	3	48	1.17
6823108--6823154	2	24.0	2	91	4	78	48	0	2	48	1.13
6828763--6828806	14	3.0	15	80	3	54	25	2	27	45	1.65
6828915--6828965	27	1.9	26	88	4	75	47	5	5	41	1.52
6839131--6839162	17	1.9	17	93	6	57	53	0	6	40	1.26
6844223--6844251	2	14.5	2	100	0	58	0	48	0	51	1.00
6864255--6864310	27	2.1	27	83	6	69	51	1	0	46	1.11
6864260--6864293	15	2.2	16	89	5	52	52	0	0	47	1.00
6864667--6864709	14	2.8	16	83	13	54	51	4	0	44	1.22
6865482--6865602	53	2.3	53	85	2	154	37	12	3	47	1.58
6882218--6882279	24	2.7	23	73	11	65	59	0	1	38	1.07
6882375--6882415	17	2.3	18	80	15	50	51	2	4	41	1.36
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6889532--6889570	9	4.3	9	84	12	53	38	10	10	41	1.73
6889697--6889743	2	23.5	2	100	0	94	48	0	0	51	1.00
6890144--6890223	28	2.8	28	75	19	83	45	3	5	46	1.43
6890428--6890466	19	2.0	21	90	10	64	53	7	5	33	1.51
6890456--6890523	26	2.7	26	84	6	86	42	10	5	41	1.63
6892905--6892961	30	1.9	29	89	10	89	49	5	7	38	1.53
6893865--6894016	14	10.1	15	66	20	61	66	0	2	30	1.10
6893861--6893938	33	2.4	32	83	12	104	67	1	1	29	1.06
6893864--6893986	49	2.6	46	80	14	135	66	0	3	29	1.13
6893995--6894044	6	8.0	6	78	8	55	74	0	2	24	0.93
6893964--6894065	32	3.2	32	83	2	116	68	0	1	29	1.00
6894041--6894075	18	1.9	18	88	0	52	57	0	2	40	1.14
6897743--6897773	16	1.9	16	93	0	53	25	6	9	58	1.54
6906359--6906421	29	2.2	29	97	0	117	34	15	9	39	1.80
6907719--6907743	2	12.5	2	100	0	50	52	0	0	48	1.00
6911706--6911777	36	2.0	36	91	0	117	27	20	12	38	1.89
6913669--6913770	22	4.5	22	75	18	86	50	0	1	47	1.19
6913841--6913898	16	3.8	16	72	22	61	46	3	0	50	1.18
6913820--6913906	31	3.1	28	79	19	94	44	2	0	52	1.13
6913732--6913996	130	2.1	128	86	6	362	39	1	2	56	1.23
6913925--6913953	15	1.9	15	100	0	58	13	3	0	82	0.79
6913947--6914005	27	2.1	28	84	3	75	40	1	6	50	1.39
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6914103--6914155	26	2.0	26	88	0	79	37	0	0	62	0.96
6914111--6914210	42	2.4	41	86	6	139	40	2	1	57	1.17
6914095--6914210	19	5.6	20	74	20	87	41	1	0	56	1.16
6914737--6914850	15	8.1	15	68	17	68	50	0	0	49	1.06
6914740--6914852	57	2.0	55	87	3	163	52	0	0	46	1.06
6914804--6914847	13	3.4	14	81	12	58	52	0	0	47	1.00
6914900--6914943	23	2.0	22	82	13	54	25	4	0	70	1.06
6916134--6916211	33	2.4	33	78	4	86	33	0	2	64	1.08
6916171--6916209	20	2.0	20	85	10	53	30	0	2	66	1.05
6919780--6919821	21	2.0	21	85	4	57	64	0	7	28	1.20
6930552--6930583	2	16.0	2	100	0	64	50	0	0	50	1.00
6949191--6949228	3	12.7	3	89	10	60	0	31	0	68	0.90
6979031--6979071	14	2.9	14	92	3	64	41	2	0	56	1.13
6980000--6980063	17	3.9	16	71	22	53	57	0	1	40	1.08
6979995--6980079	31	2.7	31	94	0	143	57	0	1	41	1.06
6980020--6980069	13	3.5	13	76	23	55	64	0	0	36	0.94
6980002--6980063	18	3.8	17	76	22	69	59	0	1	38	1.07
6980701--6980740	18	2.1	20	86	9	57	35	7	2	55	1.42
6980764--6980860	18	5.4	17	70	22	65	37	1	0	61	1.03
6980826--6980860	17	2.2	15	90	10	52	34	0	0	65	0.93

Tables:   1   2   3   4   5   6   7   8   9   10   11   12

The End!