genome.fa.s14.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_018397267.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_204.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  6982396

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   

This is table  4  of  12  ( 1406 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2121047--2121230	94	2.0	94	100	0	368	27	29	17	25	1.97
2128095--2128153	30	2.0	30	93	3	102	59	3	6	30	1.40
2128784--2128905	62	2.0	62	96	0	226	48	17	16	18	1.82
2130488--2130517	3	10.0	3	100	0	60	66	0	0	33	0.92
2141875--2141920	19	2.2	22	88	11	71	17	32	0	50	1.47
2142216--2142379	53	3.1	53	85	2	206	42	15	16	25	1.87
2147103--2147139	19	2.1	18	85	14	51	62	0	0	37	0.96
2155723--2155747	2	12.5	2	100	0	50	48	52	0	0	1.00
2165084--2165176	48	1.9	48	95	0	168	44	30	5	20	1.74
2165940--2165990	23	2.3	23	83	10	61	52	1	0	45	1.12
2166732--2166770	20	1.9	20	84	5	51	82	12	0	5	0.83
2196821--2196860	2	20.0	2	100	0	80	50	0	0	50	1.00
2203040--2203157	60	2.0	60	98	0	227	16	28	11	42	1.84
2208895--2208927	2	16.5	2	100	0	66	0	48	0	51	1.00
2213469--2213512	21	2.1	21	91	0	70	40	4	22	31	1.74
2213789--2213875	23	3.8	23	73	18	74	37	1	0	60	1.04
2225956--2226002	21	2.2	21	78	14	53	59	8	0	31	1.27
2229948--2229974	2	13.5	2	100	0	54	48	0	0	51	1.00
2236653--2236693	15	2.9	15	76	23	52	51	0	0	48	1.00
2237216--2237245	16	1.9	16	93	6	53	33	0	3	63	1.11
2237199--2237298	52	1.9	52	83	4	130	43	1	1	55	1.13
2237868--2237965	48	2.0	48	100	0	196	20	8	29	41	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2240366--2240417	2	26.0	2	92	0	68	42	5	0	51	1.25
2243830--2243945	58	2.0	59	88	8	175	48	12	19	18	1.81
2264835--2264879	2	22.5	2	100	0	90	51	0	0	48	1.00
2265384--2265424	20	2.1	19	90	4	64	68	0	0	31	0.90
2265382--2265425	14	3.0	15	87	9	56	65	0	0	34	0.93
2282436--2282465	2	15.0	2	100	0	60	50	0	0	50	1.00
2289260--2289290	15	2.1	15	100	0	62	38	6	12	41	1.69
2291119--2291143	2	12.5	2	100	0	50	0	48	0	52	1.00
2291745--2291803	24	2.5	24	86	5	84	25	54	10	10	1.65
2291793--2291867	36	2.1	36	89	0	114	29	52	8	10	1.65
2291853--2291950	12	8.2	12	71	4	54	29	47	10	12	1.74
2291850--2291963	60	1.9	60	92	0	192	27	48	10	14	1.76
2291814--2291930	48	2.4	48	81	2	128	29	48	9	12	1.72
2291910--2291998	24	3.7	24	71	5	81	25	49	10	14	1.75
2302939--2302968	12	2.5	12	88	0	51	50	10	40	0	1.36
2305409--2305488	41	2.0	41	87	0	115	45	3	10	41	1.56
2313758--2313798	2	20.5	2	100	0	82	51	0	0	48	1.00
2321038--2321076	2	19.5	2	89	10	62	46	2	0	51	1.14
2324737--2324794	26	2.2	27	81	3	64	25	10	25	37	1.88
2326100--2326148	18	2.7	18	93	0	89	44	16	18	20	1.86
2330068--2330099	3	10.7	3	100	0	64	0	34	34	31	1.58
2335333--2335376	2	22.0	2	100	0	88	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2345176--2345202	2	13.5	2	100	0	54	51	0	0	48	1.00
2346158--2346185	4	7.0	4	100	0	56	25	0	0	75	0.81
2354303--2354337	10	3.4	10	88	7	52	74	2	14	8	1.17
2358669--2358771	33	3.2	33	81	10	99	54	1	0	42	1.18
2358723--2358770	8	5.9	8	83	11	53	64	4	0	31	1.12
2358863--2358912	24	2.1	24	82	14	59	66	2	2	30	1.14
2372366--2372404	3	13.0	3	88	0	60	30	35	2	30	1.71
2376029--2376058	7	4.4	7	95	4	53	63	0	10	26	1.26
2377060--2377089	2	15.0	2	92	0	51	0	53	0	46	1.00
2383410--2383434	7	3.6	7	100	0	50	88	0	0	12	0.53
2394098--2394135	10	4.0	10	80	13	53	76	0	0	23	0.79
2395758--2395856	32	3.1	30	81	12	110	58	0	0	41	0.98
2395781--2395846	14	4.6	14	74	12	62	56	0	0	43	0.99
2413891--2413941	24	2.1	24	85	7	68	50	23	25	0	1.49
2416916--2416962	24	2.0	24	95	0	85	27	21	27	23	1.99
2416957--2417113	24	6.5	24	90	2	226	15	21	41	22	1.90
2435933--2435966	2	17.0	2	100	0	68	50	0	0	50	1.00
2448694--2448762	34	2.0	34	97	0	129	42	20	10	27	1.84
2456443--2456467	1	25.0	1	100	0	50	0	0	100	0	0.00
2471661--2471702	20	2.1	20	86	0	57	35	2	2	59	1.23
2480721--2480748	3	9.3	3	100	0	56	0	35	32	32	1.58
2497003--2497041	15	2.5	15	83	4	51	23	0	0	76	0.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2509567--2509640	22	3.4	21	74	20	62	51	0	2	45	1.15
2509582--2509672	20	3.8	25	71	23	63	48	1	1	49	1.15
2512844--2512876	15	2.2	15	89	10	50	51	6	0	42	1.26
2512935--2512988	28	2.0	28	92	3	92	64	0	0	35	0.94
2514856--2514933	27	2.9	28	76	14	83	46	1	2	50	1.23
2535052--2535127	29	2.7	29	85	4	93	34	9	15	40	1.79
2535149--2535199	24	2.2	24	82	10	61	31	13	13	41	1.84
2535127--2535201	26	3.0	25	75	9	73	30	14	12	42	1.82
2535215--2535307	45	2.1	45	81	4	107	31	20	16	32	1.94
2535243--2535372	65	2.0	65	83	0	161	30	17	15	36	1.91
2535487--2535527	18	2.4	16	81	14	55	34	2	0	63	1.08
2544303--2544439	28	4.9	28	74	1	96	40	5	8	45	1.58
2558326--2558381	25	2.2	27	75	18	66	62	1	0	35	1.06
2558336--2558390	25	2.3	24	84	12	69	52	3	0	43	1.18
2558602--2558640	19	2.1	19	90	0	60	38	0	2	58	1.12
2563861--2563895	3	11.7	3	87	0	52	34	0	31	34	1.58
2611585--2611648	27	2.4	27	100	0	128	18	15	34	31	1.93
2614745--2614804	32	1.9	30	83	6	75	45	5	13	36	1.65
2616099--2616176	38	2.1	38	95	0	138	30	29	11	28	1.92
2655246--2655274	2	14.5	2	100	0	58	0	51	0	48	1.00
2664450--2664645	81	2.4	81	86	0	275	43	11	11	32	1.77
2664570--2664636	26	2.5	26	78	11	73	50	7	8	32	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2669040--2669076	19	1.9	19	100	0	74	27	24	27	21	1.99
2672305--2672333	14	2.0	15	93	6	51	20	20	10	48	1.79
2673439--2673482	22	2.0	22	95	0	79	52	13	4	29	1.60
2674459--2674545	34	2.6	33	85	1	102	28	9	4	57	1.50
2685475--2685534	19	3.1	19	73	7	59	41	3	0	55	1.16
2687190--2687224	2	18.5	2	88	11	56	54	0	0	45	0.99
2724201--2724229	3	9.7	3	100	0	58	31	0	0	68	0.89
2739935--2740010	24	3.1	23	79	5	71	38	2	5	53	1.37
2752414--2752481	30	2.3	30	84	5	84	41	11	10	36	1.76
2752422--2752489	30	2.4	27	71	15	66	44	8	8	38	1.67
2761535--2761747	80	2.7	80	88	2	275	41	10	7	39	1.69
2762087--2762337	80	3.2	80	88	4	321	40	8	9	41	1.68
2781107--2781164	30	1.9	30	92	0	98	62	3	0	34	1.12
2781120--2781193	29	2.6	29	77	16	82	64	1	4	29	1.20
2781192--2781236	21	2.0	22	83	8	56	40	2	2	55	1.24
2789375--2789422	24	2.0	24	95	0	87	43	25	10	20	1.83
2797627--2797672	23	2.0	23	100	0	92	34	26	8	30	1.86
2799590--2799796	104	2.0	104	90	0	324	31	14	24	29	1.94
2830157--2830201	2	22.5	2	100	0	90	0	51	0	48	1.00
2831605--2831667	30	2.1	30	82	5	74	39	4	1	53	1.31
2845996--2846040	23	2.0	23	86	8	65	60	2	0	37	1.09
2866632--2866660	2	14.5	2	100	0	58	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2882120--2882151	15	2.1	15	94	0	55	0	56	9	34	1.32
2886760--2886807	2	24.5	2	91	4	80	52	0	47	0	1.00
2889925--2889970	6	7.7	6	85	0	56	0	13	32	54	1.39
2897534--2897559	2	13.0	2	100	0	52	50	0	0	50	1.00
2911031--2911085	16	3.2	18	80	17	55	56	0	0	43	0.99
2930260--2930308	21	2.2	21	85	7	62	2	2	16	79	0.92
2930260--2930308	18	2.8	18	85	11	59	2	2	16	79	0.92
2933910--2933945	3	12.0	3	100	0	72	66	0	33	0	0.92
2960658--2960684	14	1.9	14	100	0	54	81	0	7	11	0.87
2972068--2972101	2	17.0	2	93	0	59	47	0	52	0	1.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12