genome.fa.s35.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_018397288.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_60.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  745614

Tables:   1   2   

This is table  2  of  2  ( 228 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
293538--293578	14	2.8	15	77	7	57	65	0	34	0	0.93
317651--317704	24	2.3	24	83	3	65	40	12	7	38	1.72
321116--321167	24	2.2	23	86	3	68	40	13	7	38	1.73
325550--325612	23	2.7	23	80	0	63	23	6	20	49	1.72
327709--327747	19	2.1	19	85	0	51	41	5	0	53	1.23
329035--330336	171	7.6	169	74	6	900	38	11	14	33	1.82
334195--334254	23	2.7	22	77	7	59	25	8	18	48	1.75
339166--339219	25	2.2	25	83	6	65	25	31	18	24	1.97
354373--354397	11	2.3	11	100	0	50	28	0	0	72	0.86
358083--358170	29	3.1	28	83	8	97	42	10	12	35	1.77
365852--365907	29	2.0	28	92	3	94	41	7	16	35	1.75
374290--374328	19	2.1	19	85	9	53	56	0	7	35	1.28
376245--376288	21	2.0	22	86	4	63	29	0	6	63	1.20
388601--388644	20	2.3	19	85	11	63	50	0	4	45	1.22
397821--397859	6	6.5	6	84	0	51	17	2	2	76	1.01
408027--408083	29	2.0	29	92	0	96	49	19	10	21	1.78
416426--416498	29	2.4	30	84	4	94	47	20	8	23	1.76
435996--436082	25	3.4	25	79	13	95	31	32	14	21	1.94
453799--453836	18	2.1	19	95	5	69	50	0	0	50	1.00
455349--455398	12	4.1	12	97	2	91	44	24	0	32	1.54
461168--461204	19	1.9	19	88	0	56	37	0	21	40	1.54
468393--468555	29	5.6	29	74	10	127	42	9	12	36	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
468388--468545	57	2.7	60	81	9	159	39	8	12	39	1.74
468393--468555	88	1.9	88	83	5	213	42	9	12	36	1.74
468695--468727	17	1.9	17	88	11	50	42	3	12	42	1.57
468882--468923	20	2.1	20	90	0	66	64	0	16	19	1.30
478955--478996	20	2.1	20	90	0	66	19	16	0	64	1.30
480915--481064	29	5.2	29	70	16	105	40	10	10	38	1.73
481416--481457	20	2.1	20	86	8	59	61	0	19	19	1.34
493526--493606	25	3.1	24	82	12	90	25	32	20	20	1.98
495135--495167	17	2.0	16	94	5	57	0	15	0	84	0.61
512263--512320	24	2.4	24	100	0	116	31	20	12	36	1.89
513820--513913	41	2.3	41	94	0	161	37	14	10	37	1.81
513844--513913	21	3.4	21	73	11	81	38	10	11	40	1.75
520614--520710	51	1.9	51	82	0	122	24	37	31	6	1.80
520644--520853	101	2.1	102	83	2	262	21	33	36	8	1.83
520644--520864	51	4.4	51	81	2	239	20	33	36	8	1.84
521143--521267	35	3.5	35	86	1	169	31	8	14	46	1.73
524830--524862	8	4.2	8	84	7	50	87	3	0	9	0.63
524831--524862	15	2.1	15	94	0	55	87	3	0	9	0.64
529935--529987	25	2.2	24	82	3	61	26	28	15	30	1.96
537231--537355	35	3.7	35	78	9	152	32	8	16	43	1.77
538691--538722	15	2.1	15	94	0	55	50	12	9	28	1.71
550566--550614	14	3.1	15	82	17	55	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
550582--550636	21	2.8	19	82	12	67	45	1	1	50	1.22
553821--554116	35	8.4	35	76	1	252	31	6	14	44	1.70
553767--554022	140	1.8	142	86	1	372	32	6	14	45	1.71
553767--554022	71	3.6	71	83	1	300	32	6	14	45	1.71
554035--554137	35	2.9	35	85	1	152	37	5	15	40	1.71
553767--554117	71	5.0	70	77	2	290	32	6	14	43	1.70
559695--559753	21	2.8	21	81	0	73	20	22	20	37	1.95
571610--571664	22	2.5	22	81	0	65	38	7	14	40	1.74
571632--571823	71	2.7	71	86	0	249	32	5	13	43	1.67
571690--571829	36	3.9	36	84	2	194	32	7	15	45	1.74
574152--575779	171	9.6	170	73	8	1098	34	13	12	37	1.84
574581--574906	169	1.9	169	79	7	367	36	14	11	38	1.81
574155--575900	341	5.1	341	73	9	835	34	13	12	37	1.83
576461--577597	171	6.7	169	74	7	588	32	14	13	37	1.86
576863--577523	170	3.9	170	78	5	432	33	14	13	38	1.86
576663--577587	340	2.7	341	75	7	777	32	15	13	38	1.86
577208--577597	170	2.3	169	81	1	449	34	15	12	38	1.84
576464--577597	342	3.3	339	75	8	881	32	14	13	38	1.86
587785--587823	21	1.9	20	84	5	51	71	2	20	5	1.17
590116--595803	171	33.6	169	71	11	1726	34	14	12	39	1.83
590120--595801	342	16.8	340	72	9	2701	34	14	12	39	1.83
591638--591917	138	2.0	139	82	2	339	35	14	10	39	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
591777--595805	683	5.9	680	75	8	2801	34	14	11	39	1.82
591777--595805	171	23.6	170	74	7	2290	34	14	11	39	1.82
599839--601523	171	9.9	170	72	7	795	33	13	11	37	1.82
599962--601536	513	3.1	508	78	4	1600	33	14	11	37	1.82
601793--603299	171	8.9	168	74	8	943	33	13	12	38	1.83
601539--609829	342	24.2	341	74	6	5116	34	13	12	38	1.82
604079--604142	21	3.0	20	80	8	74	45	15	17	21	1.85
603496--609829	171	37.2	171	75	5	4550	34	13	12	38	1.82
603496--609829	341	18.6	342	76	4	4714	34	13	12	38	1.82
617063--617119	21	2.7	21	83	0	78	21	21	17	40	1.92
625836--626037	83	2.4	82	87	4	289	19	15	9	55	1.67
634071--634118	16	3.0	16	88	11	64	0	33	0	66	0.92
644345--644399	16	3.4	16	90	7	85	0	32	3	63	1.12
645482--645511	15	2.1	14	93	6	51	36	16	0	46	1.47
653275--653320	22	2.1	22	95	0	83	17	43	21	17	1.88
657463--657507	16	2.8	16	80	6	56	66	4	28	0	1.11
658605--658657	25	2.2	24	86	3	70	24	15	35	24	1.94
676370--676552	68	2.7	68	78	7	208	35	12	16	34	1.87
677110--677157	20	2.4	20	79	6	53	43	10	14	31	1.79
683638--683688	25	2.0	25	85	7	68	72	0	23	3	1.01
688943--689088	28	5.1	27	80	14	150	38	11	8	41	1.73
688940--689090	58	2.6	57	83	9	180	39	12	8	39	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
688934--689090	29	5.4	28	80	8	163	40	12	8	39	1.72
693010--693128	28	4.1	28	78	9	123	40	11	7	40	1.70
694647--694810	68	2.4	69	83	1	195	34	12	19	33	1.89
702844--702877	11	3.1	11	86	0	50	26	0	0	73	0.83
713404--713458	23	2.3	24	78	6	58	41	5	1	50	1.36
712920--713788	251	3.5	246	79	8	847	35	11	5	47	1.64
712920--717399	248	18.3	249	75	11	2246	34	11	6	47	1.65
714461--714506	20	2.2	20	80	3	56	23	17	8	50	1.74
713895--717343	493	7.0	494	79	7	3551	34	11	6	47	1.65
717060--717102	21	1.9	22	86	13	61	46	2	0	51	1.13
713882--717343	248	14.0	246	80	6	3498	34	11	6	47	1.65
723771--724123	96	3.7	95	80	2	355	45	5	22	23	1.71
727137--727176	21	1.9	21	85	10	55	45	0	25	30	1.54
727145--727533	96	4.1	96	86	1	541	47	5	25	21	1.72
727145--727533	191	2.0	192	89	2	595	47	5	25	21	1.72
730420--730723	96	3.2	96	84	1	414	21	23	4	50	1.68
741220--741412	62	3.1	62	90	0	287	18	16	44	20	1.87
741377--741530	79	1.9	79	89	0	236	21	14	37	26	1.92
741394--741535	39	3.6	40	71	16	125	22	14	35	27	1.93
741905--742021	61	1.9	62	82	1	146	17	15	39	27	1.90

Tables:   1   2

The End!