genome.fa.s42.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_018397295.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_188.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  325355

Tables:   1   2   

This is table  2  of  2  ( 175 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
235872--236276	171	2.4	171	78	7	428	41	12	11	34	1.79
236467--242343	171	34.5	171	71	7	2936	38	13	12	33	1.82
237024--238557	512	3.0	502	74	8	1015	38	14	12	33	1.83
236602--242343	511	11.2	502	71	8	1986	38	13	12	33	1.82
236624--242343	341	16.8	340	72	8	2733	38	13	12	33	1.82
242445--247284	171	28.4	172	73	7	2844	33	13	12	38	1.82
242466--247284	512	9.4	507	74	7	2142	33	13	12	38	1.82
246228--246814	170	3.5	167	77	7	447	34	12	11	42	1.79
247713--249006	340	3.8	338	76	6	846	37	12	14	34	1.83
247642--249450	171	10.6	169	74	7	1010	38	12	13	33	1.82
249638--250141	171	3.0	160	78	10	444	39	10	12	33	1.78
250470--251403	171	5.5	171	72	3	646	38	13	13	31	1.83
254520--254853	169	2.0	157	79	10	339	37	11	13	34	1.81
254065--258170	171	24.0	170	74	6	2641	38	12	13	34	1.82
254065--266555	342	36.7	340	70	9	3921	38	12	12	34	1.82
255126--258127	341	8.8	342	74	7	948	39	12	12	34	1.82
258058--258283	114	2.0	115	83	2	285	43	10	13	32	1.78
258179--266555	171	49.1	171	74	5	4862	38	13	12	33	1.82
258658--260728	854	2.4	853	78	5	1950	40	13	11	34	1.81
259168--261808	512	5.2	513	74	7	1161	39	13	12	33	1.82
268240--270957	171	16.0	171	71	8	1490	37	12	12	34	1.81
269552--269860	169	1.8	170	84	3	426	40	12	11	35	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
273155--277270	171	23.9	171	73	6	2036	37	12	13	33	1.83
273148--277270	343	12.0	342	73	6	2168	37	12	13	33	1.83
276054--276712	341	2.0	330	82	4	729	38	12	15	32	1.85
277565--277698	68	2.0	68	95	2	243	18	22	9	49	1.77
278678--279212	170	3.1	169	79	5	549	38	13	13	33	1.85
279968--280206	73	3.3	72	82	3	291	25	21	14	38	1.92
281771--281845	32	2.5	30	78	10	82	22	20	9	48	1.78
281957--282009	26	2.0	26	96	0	97	28	9	15	47	1.76
286832--286873	20	2.0	20	82	13	50	30	9	4	54	1.53
288627--288879	73	3.5	73	80	3	242	25	20	14	39	1.90
289401--289954	171	3.2	171	75	2	495	39	12	11	34	1.79
290505--292467	171	11.5	169	72	8	1027	36	12	13	34	1.82
292784--293649	171	5.1	168	75	5	631	38	13	13	33	1.84
293288--293614	170	2.0	161	82	4	320	36	13	14	33	1.85
294576--294617	20	2.1	20	86	8	59	30	14	7	47	1.71
293853--295007	171	6.8	171	72	8	602	37	13	12	33	1.83
308106--308278	73	2.4	73	81	3	188	24	21	14	39	1.90
308654--311839	169	19.0	169	73	11	1959	39	13	12	34	1.82
308655--311810	335	9.4	330	73	12	1536	39	13	12	34	1.82
308658--311836	168	18.9	166	73	13	1690	39	13	12	34	1.82
311926--312937	171	5.9	170	78	6	940	38	12	12	36	1.81
313329--313392	27	2.4	25	79	7	65	28	34	17	20	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
314528--315027	171	3.0	161	72	13	310	40	13	12	32	1.81
314196--315048	342	2.5	342	75	3	847	40	12	11	32	1.80
316571--319638	171	17.9	170	72	7	1528	37	11	12	35	1.81
319634--320457	171	4.8	169	79	4	715	38	11	12	35	1.79
319634--320457	342	2.4	342	80	2	888	38	11	12	35	1.79
320484--323276	171	16.3	170	77	4	2294	39	12	12	34	1.82
320495--325355	342	14.3	341	75	6	3278	38	13	12	34	1.82
319696--321253	799	1.9	798	79	3	1709	39	12	11	35	1.79
320504--325355	513	9.5	512	75	7	3251	38	13	12	34	1.82
323275--325355	171	12.2	169	76	6	1621	37	13	13	34	1.83
323276--325355	341	6.1	339	75	6	1375	37	13	13	34	1.83

Tables:   1   2

The End!