genome.fa.s47.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_018397300.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_505.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  267416

Tables:   1   2   

This is table  2  of  2  ( 156 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
224359--224555	30	6.7	29	81	7	195	40	10	7	41	1.68
224359--224555	58	3.4	57	83	6	227	40	10	7	41	1.68
224359--224551	88	2.2	87	84	7	248	39	10	7	41	1.68
224359--224561	57	3.5	57	83	6	230	39	10	7	41	1.69
225688--232953	171	42.6	168	73	9	4385	40	13	12	33	1.83
225688--232953	341	21.3	340	75	8	5189	40	13	12	33	1.83
227818--227886	31	2.2	31	92	0	111	31	11	15	40	1.84
230600--230876	150	1.8	154	84	3	382	44	9	12	33	1.75
229090--232190	840	3.7	836	80	6	2746	40	13	12	33	1.82
231958--232000	21	2.0	22	81	4	52	65	4	0	30	1.13
232578--233342	390	2.0	390	81	3	914	39	13	12	35	1.82
232999--233454	170	2.7	168	81	6	483	42	13	11	32	1.80
234839--237114	170	13.3	171	75	7	1701	39	13	12	33	1.83
234430--235317	486	1.8	485	80	5	1078	38	12	13	35	1.83
234839--237114	509	4.4	506	76	7	1617	39	13	12	33	1.83
234839--237114	341	6.7	338	76	8	1671	39	13	12	33	1.83
237144--237506	172	2.1	173	80	2	399	39	14	12	34	1.83
238722--238796	7	10.4	7	77	11	64	65	0	34	0	0.93
238722--238796	15	5.1	14	78	15	64	65	0	34	0	0.93
238722--238792	29	2.4	30	86	4	101	64	0	35	0	0.94
241325--241420	46	2.1	46	84	0	120	39	13	17	29	1.88
241371--257055	171	91.5	171	74	8	9015	39	13	13	33	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
243217--243547	176	1.9	173	80	7	384	40	12	11	34	1.80
242793--246359	519	7.0	501	75	8	1422	39	13	13	34	1.83
249615--249645	11	2.7	11	95	5	53	48	0	3	48	1.17
257053--257652	170	3.5	170	75	7	534	40	13	13	33	1.83
257888--258435	171	3.2	166	79	5	472	41	14	13	30	1.85
258790--261084	171	13.4	169	76	7	1607	33	13	13	39	1.84
258775--261907	512	6.2	513	76	8	2323	33	14	12	39	1.83
259134--261052	855	2.2	851	78	6	1947	33	13	13	39	1.84
258790--261084	343	6.7	339	75	6	1744	33	13	13	39	1.84
261153--261867	168	4.2	167	75	9	594	33	13	11	41	1.80
265582--265631	8	5.9	8	79	11	55	0	36	0	64	0.94
265560--265632	32	2.2	34	81	13	89	0	35	1	63	1.04
265585--265631	17	2.7	17	83	9	60	0	34	0	65	0.93
266532--266868	172	2.0	172	81	6	396	37	12	14	35	1.83

Tables:   1   2

The End!