genome.fa.s114.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000114.1 Hibiscus syriacus cultivar Beakdansim tig00000205_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  799156

Tables:   1   2   3   4   

This is table  2  of  4  ( 434 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
215260--215317	15	3.8	15	81	2	71	39	17	1	41	1.59
215720--215767	18	2.7	18	100	0	96	22	31	18	27	1.97
220016--220094	38	2.1	38	85	0	104	49	15	11	24	1.77
220058--220118	24	2.5	24	86	5	79	52	18	11	18	1.74
224814--224876	24	2.6	24	84	0	81	53	15	11	19	1.71
225689--225724	2	18.0	2	100	0	72	50	0	0	50	1.00
239371--239416	22	2.1	22	84	8	58	36	2	0	60	1.09
244425--244473	26	1.9	25	83	4	62	48	16	10	24	1.76
255697--255750	26	2.1	26	92	0	90	37	24	12	25	1.91
261017--261283	59	4.5	59	84	2	313	32	13	24	29	1.93
260961--261283	118	2.7	118	83	1	362	32	13	25	28	1.94
261299--261854	39	14.7	39	77	6	464	37	16	15	31	1.90
261299--261926	77	8.3	77	79	6	448	37	15	16	31	1.90
261290--261934	39	17.1	36	73	8	130	36	15	15	32	1.89
261736--261934	76	2.7	75	84	2	256	36	12	16	35	1.85
261420--261934	186	2.7	185	79	9	594	36	13	17	32	1.89
262234--262277	17	2.6	17	96	3	81	4	25	15	54	1.60
266768--267169	54	7.4	54	87	2	513	32	16	14	35	1.90
266815--266897	27	3.1	26	61	19	62	34	14	18	32	1.91
266744--267170	162	2.6	162	88	1	615	32	17	14	35	1.90
266700--267192	54	9.1	54	82	4	494	32	17	14	35	1.91
273739--274215	54	8.9	54	83	6	544	32	18	14	35	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
273739--274215	162	2.9	162	85	3	622	32	18	14	35	1.91
274269--274297	15	1.9	15	100	0	58	48	17	6	27	1.72
274647--274697	20	2.5	21	81	12	61	31	21	17	29	1.96
278485--278514	15	1.9	16	93	6	53	46	6	6	40	1.56
283192--283245	23	2.3	23	87	0	81	33	18	16	31	1.93
283394--283466	16	4.7	15	79	5	65	38	19	4	38	1.71
285593--285651	2	31.5	2	74	19	56	47	1	1	49	1.21
285593--285650	15	3.7	15	76	19	64	48	1	1	48	1.22
285688--285745	26	2.2	26	84	12	73	50	6	0	43	1.29
285706--285770	26	2.4	26	85	12	78	47	12	0	40	1.41
285752--285784	14	2.3	15	84	10	50	42	15	0	42	1.46
285770--285863	27	3.7	26	77	21	94	42	8	2	46	1.46
285725--285811	43	2.1	42	83	12	108	43	11	1	43	1.48
285811--285874	22	2.8	22	83	4	65	39	6	1	53	1.36
285829--285881	23	2.4	22	81	12	63	39	7	0	52	1.30
286272--286462	94	2.0	94	100	0	382	38	20	7	33	1.80
288733--288763	12	2.6	12	100	0	62	35	0	12	51	1.40
290576--290606	13	2.4	13	88	0	53	51	0	6	41	1.27
294247--294322	22	3.6	20	74	8	71	34	22	17	26	1.96
295483--295987	258	2.0	247	93	4	866	32	12	17	37	1.87
307589--308187	135	4.4	135	88	1	828	31	21	18	29	1.97
324030--324059	15	1.9	16	93	6	53	46	6	6	40	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
324627--324752	30	4.2	30	79	6	139	22	12	4	60	1.51
326604--326641	18	2.1	18	95	0	67	21	18	10	50	1.76
328478--328588	14	8.4	14	78	16	89	77	8	13	0	1.03
328478--328586	11	9.4	12	75	17	88	77	8	13	0	1.04
328483--328543	31	1.9	32	93	3	106	73	9	14	1	1.16
328491--328580	42	2.1	42	81	6	101	76	8	13	1	1.06
328478--328587	13	8.4	13	71	20	77	77	8	13	0	1.04
329800--330029	30	7.0	34	68	22	143	25	16	16	41	1.89
329723--330118	130	3.1	128	85	4	483	28	16	14	39	1.88
330068--330153	36	2.4	36	94	0	145	24	22	12	40	1.89
330241--330715	129	3.6	130	79	4	459	27	30	16	25	1.97
332461--332558	29	3.4	28	74	14	83	19	12	7	61	1.54
336670--336717	18	2.8	18	87	6	73	35	6	29	29	1.82
338616--338642	3	9.0	3	100	0	54	66	0	33	0	0.92
342636--342704	36	2.0	33	83	13	86	47	1	4	46	1.31
342663--342710	26	1.9	24	91	8	78	50	2	2	45	1.25
343791--343890	28	3.6	28	93	2	166	18	30	20	32	1.96
343795--343898	55	1.9	55	89	0	163	19	28	20	31	1.97
345965--345994	15	1.9	16	93	6	53	46	6	6	40	1.56
346118--346184	33	2.0	33	100	0	134	43	8	20	26	1.82
352498--352549	23	2.3	23	77	6	63	17	23	40	19	1.91
356376--356415	21	1.9	21	85	10	55	35	10	2	52	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
361080--361139	31	1.9	31	83	6	77	41	3	20	35	1.68
361218--361265	11	4.4	11	78	5	53	41	0	0	58	0.98
365156--365430	69	4.0	68	81	3	316	24	27	22	26	2.00
365156--365430	138	2.0	139	84	2	365	24	27	22	26	2.00
365374--365468	38	2.5	38	82	0	136	28	23	22	26	1.99
365632--366275	51	12.7	51	85	2	767	41	21	10	27	1.85
365633--366265	152	4.2	153	84	2	801	41	21	9	27	1.84
365924--366051	25	5.0	26	63	12	77	41	25	9	24	1.84
366141--366274	26	5.3	26	67	12	98	41	20	11	25	1.87
365633--366266	304	2.1	305	87	2	898	41	21	9	27	1.84
367543--367586	14	3.2	14	87	6	72	18	29	18	34	1.94
367545--367587	13	3.2	13	90	3	68	16	27	20	34	1.94
368160--368219	27	2.2	28	85	8	88	46	11	11	30	1.76
369766--369846	31	2.6	31	79	9	103	19	28	29	22	1.98
378661--378703	17	2.6	17	81	3	52	72	9	16	2	1.21
379422--379452	12	2.6	12	94	0	53	22	25	29	22	1.99
381889--382136	121	2.0	121	99	0	487	37	16	12	32	1.87
385222--385280	31	1.9	31	82	6	75	15	27	28	28	1.96
387122--387215	42	2.2	42	98	0	179	41	0	29	28	1.56
387830--387868	20	1.9	21	84	5	53	33	0	23	43	1.54
388037--388114	23	3.5	23	75	13	74	32	14	23	30	1.94
388025--388103	23	3.5	22	73	11	70	29	16	24	30	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
388981--389016	16	2.2	16	95	0	63	33	13	47	5	1.67
394376--394451	23	3.4	22	76	5	71	26	17	23	32	1.96
398339--398379	18	2.3	18	95	0	73	17	51	19	12	1.76
400851--400959	48	2.3	48	84	6	132	22	11	16	49	1.77
400887--400959	24	3.0	24	77	0	74	23	8	17	50	1.73
402235--402310	10	7.8	10	78	8	68	60	2	3	32	1.29
402241--402349	3	34.7	3	68	20	55	60	2	4	32	1.31
402242--402310	13	5.3	13	75	18	72	60	2	2	33	1.26
402242--402352	24	4.7	24	71	16	79	60	2	4	32	1.31
402269--402420	58	2.6	59	75	13	161	60	2	7	29	1.37
405087--405128	18	2.3	18	83	0	57	21	23	30	23	1.99
409845--409886	18	2.3	18	83	0	57	21	23	30	23	1.99
422346--422507	77	2.1	76	94	3	281	35	12	8	43	1.73
425919--426030	24	4.7	24	87	6	156	23	16	19	40	1.91
425967--426040	24	3.1	24	86	3	78	21	16	18	43	1.88
430669--430771	50	2.1	50	83	1	127	53	10	11	24	1.69
430741--430860	40	3.2	39	62	26	94	44	10	12	33	1.76
430735--430848	35	3.1	35	62	26	83	46	10	11	31	1.74
430709--430932	74	3.0	74	96	1	412	46	9	11	32	1.71
432901--433221	128	2.5	128	88	2	457	47	10	7	34	1.66
433334--433360	3	9.0	3	100	0	54	66	0	0	33	0.92
434808--434848	16	2.6	16	88	3	57	51	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
434805--434848	19	2.4	18	92	3	70	52	0	0	47	1.00
435853--435890	18	2.1	18	95	0	67	55	5	7	31	1.51
436268--436305	11	3.5	11	96	3	69	0	15	0	84	0.63
443441--443472	16	2.1	16	88	11	50	31	3	12	53	1.54
449231--449320	3	30.0	3	82	4	92	56	0	0	43	0.99
449794--449840	18	2.7	17	86	3	67	34	6	29	29	1.82
450201--450646	235	1.9	235	90	8	719	38	18	15	28	1.91
457126--457163	20	1.9	20	88	0	58	23	26	28	21	1.99
459286--459323	12	3.3	12	85	14	62	13	23	44	18	1.85
459293--459362	5	13.8	5	79	8	79	5	21	54	18	1.64

Tables:   1   2   3   4