genome.fa.s114.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000114.1 Hibiscus syriacus cultivar Beakdansim tig00000205_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  799156

Tables:   1   2   3   4   

This is table  4  of  4  ( 434 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
645937--645980	21	2.0	23	86	8	65	52	0	11	36	1.38
647024--647099	24	3.2	24	94	0	134	30	2	35	31	1.72
650535--650583	24	2.0	24	96	0	89	28	2	38	30	1.68
652529--652634	20	5.2	20	69	13	65	26	23	20	29	1.99
653393--653526	23	5.8	23	85	5	139	35	20	21	21	1.96
656204--656283	24	3.3	24	77	10	74	35	23	22	18	1.96
659539--659588	14	3.7	13	78	7	55	18	16	18	48	1.82
661060--661110	25	2.0	25	100	0	102	7	11	27	52	1.65
662058--662102	20	2.2	20	88	0	63	33	17	17	31	1.94
663859--663935	37	2.1	36	86	11	104	45	3	0	50	1.20
663910--663968	25	2.3	26	80	5	68	42	5	1	50	1.34
664136--664175	20	2.1	19	85	4	53	50	2	2	45	1.28
665696--665754	19	3.3	19	72	18	72	18	15	0	66	1.26
666891--666927	16	2.2	17	90	4	58	54	16	13	16	1.72
671255--671283	15	1.9	15	100	0	58	48	27	6	17	1.72
671411--671791	177	2.1	183	88	6	566	42	2	8	46	1.49
671797--671830	9	3.7	9	88	4	50	23	8	14	52	1.69
676542--676581	21	1.9	21	85	10	55	35	7	2	55	1.42
680894--681175	59	4.8	59	93	1	478	35	19	12	33	1.88
681512--681560	20	2.6	18	87	6	62	22	30	20	26	1.98
681507--681560	18	2.9	18	79	12	65	22	31	18	27	1.97
681582--681637	22	2.7	21	81	8	69	26	26	16	30	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
701535--701571	17	2.1	18	95	5	67	32	0	0	67	0.91
701524--701576	23	2.3	22	78	15	54	32	1	0	66	1.03
701534--701577	17	2.5	18	85	14	65	31	0	0	68	0.90
701581--701642	15	3.9	16	79	8	72	50	1	0	48	1.10
703042--703091	24	2.0	24	88	11	75	46	0	8	46	1.32
703116--703275	28	5.2	28	70	21	97	44	6	9	40	1.62
703211--703275	29	2.3	29	86	2	87	43	7	9	40	1.65
703122--703372	98	2.5	99	87	7	339	43	5	8	41	1.59
703313--703446	29	4.3	29	71	16	90	42	4	9	43	1.57
703455--703485	13	2.5	13	94	5	55	25	0	19	54	1.44
703484--703546	29	2.1	29	88	2	90	38	3	9	49	1.51
703553--703600	15	3.2	15	80	16	55	27	0	4	68	1.07
703550--703599	4	12.0	4	82	16	50	26	0	4	70	1.05
706004--706037	18	1.9	17	88	5	50	5	5	2	85	0.83
706004--706041	12	3.1	12	82	17	51	7	7	2	81	0.96
720594--720699	23	4.9	21	84	5	90	24	31	25	18	1.98
720596--720677	23	3.7	23	90	4	116	23	30	25	20	1.99
720596--720699	44	2.4	42	81	10	113	24	31	25	19	1.98
722321--722349	12	2.4	12	100	0	58	27	31	41	0	1.56
722661--722694	17	2.0	17	88	0	50	14	2	29	52	1.56
723290--723330	21	2.0	21	90	0	64	24	36	24	14	1.93
725967--725999	12	2.8	12	90	0	57	33	15	18	33	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
726315--726360	23	1.9	23	86	8	65	45	0	6	47	1.28
726416--726558	35	4.3	35	75	18	162	42	3	8	45	1.51
726376--726686	98	3.1	97	84	11	394	44	4	9	41	1.57
726567--726726	62	2.5	64	82	5	191	43	3	10	43	1.56
726567--726731	64	2.6	65	81	6	185	43	3	9	43	1.55
726860--726912	20	2.5	20	80	17	63	26	0	5	67	1.12
726860--726914	15	3.4	15	75	24	58	25	0	5	69	1.10
742031--742057	2	13.5	2	100	0	54	48	0	0	51	1.00
752552--752610	29	2.0	29	93	0	100	40	1	18	38	1.61
753994--754018	13	1.9	13	100	0	50	48	0	8	44	1.32
754237--754372	64	2.1	66	84	11	178	52	2	2	43	1.25
754264--754332	27	2.4	29	88	11	108	52	0	1	46	1.09
754241--754315	36	2.1	36	82	7	91	57	0	1	41	1.07
754370--754415	17	2.5	19	77	19	53	52	6	0	41	1.27
755407--755460	28	1.9	28	88	0	81	18	27	16	37	1.93
758951--758996	22	2.2	20	85	11	58	30	15	6	47	1.70
759296--759401	33	3.3	32	78	13	92	38	3	5	51	1.43
759577--759854	145	1.9	146	86	2	398	38	5	9	46	1.61
766046--766080	10	3.5	10	100	0	70	91	8	0	0	0.42
767797--767987	29	6.6	28	85	5	220	31	2	19	46	1.62
767797--767987	87	2.2	88	85	1	251	31	2	19	46	1.62
769478--769562	37	2.5	33	78	16	86	25	1	4	68	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
774395--774431	9	4.1	9	85	0	56	27	0	0	72	0.84
776202--776370	60	2.8	58	83	8	196	31	21	5	41	1.75
776494--776640	60	2.5	60	83	4	163	38	5	22	34	1.77
777272--777415	39	3.7	39	90	0	207	15	25	23	35	1.94
785970--786093	52	2.4	52	93	0	203	26	29	13	29	1.94
786918--786942	10	2.5	10	100	0	50	52	20	8	20	1.71
793483--793567	23	3.7	23	73	14	75	43	37	5	12	1.68
793472--793612	47	3.0	47	81	4	160	43	34	5	16	1.71

Tables:   1   2   3   4

The End!