genome.fa.s1162.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001162.1 Hibiscus syriacus cultivar Beakdansim tig00002317_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1560963

Tables:   1   2   3   4   5   6   7   8   9   

This is table  2  of  9  ( 971 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
206758--206798	15	2.7	15	100	0	82	29	12	36	21	1.90
210813--210893	24	3.5	24	70	20	75	22	24	23	29	1.99
212441--212484	21	2.1	21	82	0	52	9	38	15	36	1.80
212814--212842	14	2.0	15	93	6	51	13	3	20	62	1.46
213498--213535	20	1.9	20	94	0	67	31	34	15	18	1.92
213555--213645	46	2.0	46	91	2	148	28	26	18	26	1.98
218058--218120	5	13.2	5	83	9	62	76	3	3	17	1.05
218019--218116	37	2.6	36	81	15	119	75	3	6	15	1.12
218039--218080	15	2.6	16	81	7	50	73	2	9	14	1.18
218015--218117	36	2.9	35	79	16	104	75	2	6	14	1.12
218478--218516	2	19.5	2	100	0	78	48	0	0	51	1.00
219457--219500	14	3.1	14	80	3	52	72	0	4	22	1.02
219466--219526	23	2.7	22	80	16	63	65	0	3	31	1.09
219578--219827	75	3.4	74	89	6	366	43	6	2	47	1.43
219590--219825	38	6.2	38	90	3	370	43	5	2	47	1.41
219583--219827	113	2.2	113	89	4	365	44	6	2	46	1.43
219842--219879	15	2.6	15	87	4	51	78	2	0	18	0.86
222695--222758	26	2.5	26	85	12	87	34	7	23	34	1.84
224339--224412	20	3.7	20	81	1	76	28	0	24	47	1.52
224928--224981	24	2.3	23	83	3	72	38	1	3	55	1.28
225115--225139	12	2.1	12	100	0	50	16	24	16	44	1.86
226652--227243	118	5.1	118	76	9	538	38	12	18	30	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
226879--227525	220	2.9	224	87	4	932	38	13	16	31	1.87
227713--227738	2	13.0	2	100	0	52	50	0	0	50	1.00
227783--227825	22	2.0	22	85	0	59	51	9	13	25	1.71
230772--230890	44	2.7	44	94	0	202	26	10	13	48	1.75
232370--232408	18	2.2	18	90	0	60	53	10	5	30	1.56
232368--232427	24	2.5	24	86	0	84	50	13	6	30	1.67
234964--235006	18	2.4	18	84	7	52	32	2	37	27	1.70
235652--237516	199	9.4	200	86	4	2315	31	14	12	40	1.84
235906--235948	19	2.1	21	87	8	63	30	13	11	44	1.80
235377--237290	592	3.3	594	86	5	2643	31	15	12	40	1.84
240089--240140	27	1.9	27	96	0	95	38	13	23	25	1.91
247174--247221	24	2.0	25	87	4	71	47	0	0	52	1.00
247169--247262	41	2.3	41	80	14	104	46	2	0	51	1.13
260578--260619	12	3.6	11	82	17	50	78	0	2	19	0.86
260569--260616	19	2.6	18	81	15	53	79	2	2	16	0.93
260628--260660	15	2.1	16	88	5	50	39	9	6	45	1.61
260664--260909	37	6.6	36	75	13	193	45	9	3	41	1.52
260690--260756	31	2.2	31	86	5	91	44	7	2	44	1.47
262593--262662	29	2.4	29	88	4	97	28	14	11	45	1.79
262732--262803	24	2.6	29	72	22	82	36	8	11	44	1.70
262531--262832	135	2.2	132	82	10	353	36	12	11	39	1.80
277094--277154	22	2.8	22	87	0	86	36	19	18	26	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
282322--282360	20	2.0	20	84	0	51	23	7	23	46	1.78
282516--282596	21	3.7	22	80	11	87	18	24	34	22	1.96
282538--282598	20	2.9	21	87	7	79	18	26	34	21	1.96
287148--287228	40	2.0	40	95	0	144	19	20	13	45	1.84
289365--289397	16	2.1	16	94	0	57	54	24	15	6	1.63
289472--289518	16	2.9	16	93	0	76	59	17	10	12	1.60
291449--291492	3	14.7	3	100	0	88	68	0	0	31	0.90
292053--292137	29	2.9	29	75	6	82	45	5	15	32	1.70
294546--294579	16	2.1	16	94	0	59	17	26	20	35	1.95
294806--294836	7	4.6	7	96	4	55	61	0	16	22	1.34
299399--299484	31	2.8	30	78	15	88	41	8	17	32	1.79
301377--301417	21	2.0	21	85	0	55	34	4	12	48	1.62
304496--304540	18	2.4	18	88	3	63	26	6	0	66	1.16
304605--304671	20	3.4	20	76	12	59	20	1	1	76	0.95
304678--304731	25	2.2	25	80	12	58	22	5	0	72	1.05
308569--308654	45	1.9	45	90	2	138	52	13	12	20	1.74
309397--309690	86	3.4	86	90	1	439	31	25	21	21	1.98
309762--310343	200	2.9	199	87	2	783	32	18	21	27	1.97
311216--311257	17	2.4	18	88	4	59	23	4	2	69	1.20
311302--311360	3	19.7	3	74	19	52	25	1	0	72	0.93
311299--311354	16	3.5	17	76	18	66	26	1	0	71	0.96
311302--311360	20	3.0	20	78	14	68	25	1	0	72	0.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
311302--311392	17	5.3	17	69	16	55	24	4	0	71	1.04
311329--311392	17	3.5	18	72	6	58	23	4	0	71	1.04
311462--311558	39	2.5	39	76	15	92	23	6	2	68	1.23
311614--311640	12	2.2	12	100	0	54	37	0	0	62	0.95
320312--320386	29	2.5	29	86	4	96	24	28	14	33	1.94
322320--322386	31	2.2	31	83	5	82	37	10	29	22	1.88
323066--323141	30	2.5	31	80	6	102	27	28	10	32	1.90
325071--325136	29	2.2	29	84	10	80	36	12	27	24	1.91
325859--325916	30	1.9	30	96	0	107	27	27	8	36	1.86
330537--330579	20	2.2	20	100	0	86	41	20	0	37	1.53
332009--332054	18	2.5	19	82	6	60	50	2	28	19	1.60
337787--337833	20	2.5	18	80	12	58	36	25	12	25	1.92
337794--337832	20	2.0	20	89	0	60	35	28	12	23	1.91
338553--338602	21	2.4	21	96	0	91	38	10	2	50	1.48
345185--345212	14	2.0	14	100	0	56	21	42	7	28	1.79
349528--350376	449	1.9	450	87	3	1253	26	20	25	27	1.99
355763--355806	2	22.0	2	100	0	88	50	0	0	50	1.00
363739--363767	2	14.5	2	100	0	58	48	0	0	51	1.00
365354--365384	15	2.0	16	93	6	55	25	22	0	51	1.48
366686--366821	69	2.0	67	91	2	218	27	14	15	42	1.86
372196--372244	14	3.4	14	75	5	53	32	22	10	34	1.88
372209--372323	45	2.6	45	82	0	149	34	20	9	35	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
374339--374382	23	1.9	23	100	0	88	29	22	20	27	1.99
378981--379040	23	2.6	23	81	0	66	31	25	21	21	1.98
379125--379234	15	7.4	14	67	18	62	37	21	8	32	1.83
379126--379254	45	2.9	45	90	0	186	35	20	10	33	1.86
383928--384008	29	2.8	29	94	1	135	33	14	11	40	1.82
388666--388747	29	2.8	29	92	1	128	34	13	12	40	1.82
393034--393087	27	2.0	27	82	7	65	59	5	9	25	1.50
393461--393508	20	2.3	20	89	7	69	45	2	4	47	1.33
393491--393529	11	3.6	11	82	3	53	48	0	2	48	1.15
393453--393508	22	2.6	22	86	5	80	48	3	3	44	1.37
393453--393539	22	4.1	21	78	12	63	45	4	4	44	1.44
395624--395690	31	2.2	31	89	5	100	35	14	25	23	1.94
395769--395810	17	2.5	17	84	3	50	42	0	0	57	0.99
395775--395899	26	4.9	26	67	18	73	49	0	4	44	1.29
395827--395935	20	5.3	20	74	13	71	54	1	7	36	1.39
395848--396214	7	54.8	6	66	20	53	52	2	7	37	1.44
395827--396204	22	18.3	21	70	18	183	52	2	7	37	1.44
395836--396210	15	25.5	15	65	23	90	52	2	7	37	1.44
396047--396146	8	13.4	8	72	21	92	51	1	11	37	1.44
396141--396267	2	64.0	2	70	16	77	46	6	2	44	1.41
395841--396318	20	24.6	19	67	22	162	50	3	6	38	1.47
396246--396304	12	4.9	12	74	12	50	50	1	6	40	1.39
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
397123--397308	90	2.0	92	95	2	340	23	14	27	34	1.94
397728--397767	2	20.0	2	100	0	80	50	0	0	50	1.00
399902--399975	21	3.5	21	65	18	55	32	13	20	33	1.91
406171--406242	22	3.3	21	75	19	60	52	2	9	34	1.49
406372--406422	20	2.6	20	74	20	54	43	7	1	47	1.43
406877--406919	14	3.2	14	80	6	54	44	0	13	41	1.44
406419--407448	561	1.8	564	93	2	1784	32	13	6	47	1.69
407509--407564	20	2.8	20	97	0	103	25	25	3	46	1.69
407721--407749	12	2.3	13	94	5	51	44	0	0	55	0.99
407917--407962	24	1.9	24	82	8	58	34	13	2	50	1.53

Tables:   1   2   3   4   5   6   7   8   9