Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001162.1 Hibiscus syriacus cultivar Beakdansim tig00002317_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1560963

Tables:   1   2   3   4   5   6   7   8   9   

This is table  9  of  9  ( 971 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1551881--1551917
15
2.4
16
86
13
60
0
16
5
78
0.93
1552156--1552219
27
2.4
27
94
0
110
18
17
43
20
1.88
1552338--1552455
3
38.7
3
84
3
155
61
0
1
36
1.12
1553092--1554097
118
8.7
111
80
11
949
29
20
13
36
1.91
1553393--1553430
18
2.1
18
100
0
76
42
23
10
23
1.85
1553281--1553659
129
3.0
129
84
11
488
30
20
13
34
1.92
1553447--1554097
349
1.9
343
90
5
1035
29
20
14
36
1.92
1554568--1554622
22
2.5
22
90
0
92
38
14
12
34
1.84
1554994--1555192
54
3.8
54
84
6
248
24
22
15
38
1.92
1557334--1557967
164
3.8
167
95
3
1097
35
22
13
28
1.92
1557334--1557967
83
7.7
84
95
3
1101
35
22
13
28
1.92

Tables:   1   2   3   4   5   6   7   8   9

The End!