Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001448.1 Hibiscus syriacus cultivar Beakdansim tig00002799_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1849635

Tables:   1   2   3   4   5   6   7   8   9   

This is table  9  of  9  ( 993 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1814094--1814141
20
2.4
19
86
10
60
66
0
2
31
1.03
1814140--1814174
15
2.3
15
100
0
70
45
5
0
48
1.26
1814281--1814306
2
13.0
2
100
0
52
50
0
0
50
1.00
1814252--1814293
20
2.1
20
86
8
59
47
7
0
45
1.30
1814300--1814343
23
1.9
23
85
0
61
45
9
4
40
1.56
1814287--1814405
37
3.3
34
77
11
112
45
8
3
42
1.51
1814311--1814424
37
3.0
37
80
10
124
43
10
4
41
1.59
1815079--1815775
84
8.5
84
82
7
777
24
21
24
30
1.99
1815061--1815775
164
4.4
162
88
5
869
24
21
24
30
1.99
1815061--1815721
248
2.7
244
87
5
874
24
21
24
29
1.99
1819073--1819117
19
2.4
19
92
3
74
66
8
13
11
1.44
1821344--1821378
10
3.5
10
100
0
70
11
31
48
8
1.69
1822098--1822169
20
3.8
20
83
10
80
75
0
2
22
0.94
1822136--1822169
15
2.3
15
94
0
59
76
0
0
23
0.79
1822102--1822165
18
3.5
19
79
14
80
75
0
3
21
0.95
1822163--1822220
30
1.9
30
85
3
80
50
5
0
44
1.24
1822186--1822498
34
9.1
35
72
16
201
45
6
2
45
1.43
1822163--1822350
99
1.9
99
83
10
249
45
5
2
46
1.39
1822345--1822394
2
25.5
2
95
4
93
50
0
0
50
1.00
1822389--1822437
25
1.9
26
84
12
66
46
8
4
40
1.52
1822389--1822437
26
1.9
25
87
4
71
46
8
4
40
1.52
1822396--1822515
38
3.1
37
81
12
127
45
9
4
40
1.55
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1829614--1829686
2
36.5
2
100
0
146
49
0
0
50
1.00
1836533--1836571
20
2.0
20
84
0
51
25
0
17
56
1.41
1837428--1837495
2
34.0
2
100
0
136
50
0
0
50
1.00
1842550--1842592
20
2.2
20
91
0
68
27
34
0
37
1.57
1842550--1842592
10
4.3
10
78
0
50
27
34
0
37
1.57
1842632--1842706
16
4.4
16
67
15
51
29
1
1
68
1.06
1842820--1842876
27
2.1
28
83
3
71
33
0
5
61
1.18
1844748--1844796
3
16.3
3
95
0
89
32
0
34
32
1.58
1848616--1848677
30
2.1
30
84
6
81
19
6
33
40
1.77
1848631--1848697
30
2.2
30
83
2
80
20
4
38
35
1.73
1849599--1849635
2
18.5
2
100
0
74
0
48
0
51
1.00

Tables:   1   2   3   4   5   6   7   8   9

The End!