genome.fa.s1470.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001470.1 Hibiscus syriacus cultivar Beakdansim tig00002847_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1178067

Tables:   1   2   3   4   5   6   7   

This is table  2  of  7  ( 779 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
179559--179618	26	2.3	27	88	8	88	68	0	28	3	1.05
181625--181662	20	1.9	20	88	0	58	26	26	5	42	1.76
183118--183176	21	2.9	22	80	16	74	32	23	8	35	1.85
183487--183532	19	2.5	19	96	3	85	39	19	4	36	1.72
188966--189033	29	2.4	29	82	7	77	54	10	2	32	1.49
191209--191343	72	1.9	72	87	1	198	39	5	8	46	1.57
191833--191877	19	2.4	19	88	3	65	22	8	4	64	1.40
191904--191947	21	2.1	21	91	0	70	54	0	6	38	1.27
193045--193115	23	3.1	23	93	0	115	39	7	15	38	1.75
193761--194093	162	2.1	162	94	0	585	29	17	11	41	1.84
194077--194129	20	2.7	20	76	2	63	18	15	9	56	1.65
194028--194385	112	3.2	112	94	1	621	26	16	13	43	1.85
194295--194477	93	2.0	92	90	1	285	22	12	14	50	1.76
199220--199300	34	2.4	35	85	4	103	39	2	18	39	1.64
199520--199591	37	2.0	36	83	8	92	48	4	0	47	1.21
200423--200448	13	2.0	13	100	0	52	38	0	7	53	1.30
201515--201553	18	2.2	18	100	0	78	7	15	20	56	1.63
204233--204335	3	32.0	3	69	16	55	34	2	3	58	1.31
204233--204335	13	7.7	13	72	13	66	34	2	3	58	1.31
204219--204311	26	3.5	26	71	11	80	32	3	6	58	1.40
204219--204336	56	2.1	55	84	1	146	33	3	5	57	1.39
204299--204354	26	2.2	26	86	0	76	35	5	3	55	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
209315--209497	91	2.0	90	83	12	230	29	24	18	27	1.98
211459--211498	21	1.9	21	90	10	64	55	5	7	32	1.50
217977--218064	45	1.9	46	90	2	142	28	23	19	28	1.98
219564--219604	18	2.3	18	91	0	64	14	7	9	68	1.39
219570--219607	18	2.1	18	100	0	76	10	10	10	68	1.40
220055--220082	13	2.2	13	100	0	56	85	0	7	7	0.73
227085--227209	25	5.0	25	90	0	196	25	14	21	38	1.91
227085--227204	50	2.4	50	95	0	222	25	14	21	38	1.91
227274--227310	15	2.5	15	95	0	65	8	16	40	35	1.78
227210--227311	37	2.7	37	93	3	168	8	18	42	30	1.81
227355--227409	3	19.0	3	82	14	71	69	0	1	29	0.99
227608--227814	85	2.4	89	83	9	257	24	18	29	26	1.98
228894--228931	20	2.0	20	84	5	51	10	15	0	73	1.09
242108--242231	25	5.0	25	93	3	205	28	15	19	37	1.92
242348--242403	3	19.0	3	78	10	62	66	1	3	28	1.19
242676--242713	2	19.0	2	100	0	76	50	0	0	50	1.00
243118--243194	20	3.6	21	73	15	61	55	1	3	38	1.26
244132--244157	6	4.3	6	100	0	52	19	50	0	30	1.48
247684--247714	2	15.5	2	100	0	62	51	0	0	48	1.00
248717--248762	18	2.6	19	80	16	55	39	6	26	28	1.81
249301--249413	32	3.3	32	76	17	129	39	40	10	8	1.71
249291--249413	38	3.4	37	77	14	130	40	40	10	8	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
251418--251481	2	32.0	2	93	6	112	50	0	1	48	1.10
252723--252755	4	8.2	4	100	0	66	51	24	0	24	1.48
252753--252797	2	22.5	2	100	0	90	51	0	0	48	1.00
253295--253347	13	4.1	13	77	0	61	39	18	18	22	1.92
253296--253346	26	2.0	26	92	0	84	37	19	19	23	1.94
255509--255545	15	2.4	17	86	13	53	56	5	0	37	1.22
257597--257648	16	3.2	16	94	0	95	11	50	25	13	1.75
268266--268729	149	3.1	149	97	0	865	27	15	21	35	1.93
270878--270923	20	2.3	20	100	0	92	21	30	0	47	1.51
274994--275041	18	2.5	19	83	6	62	29	14	27	29	1.95
281856--281911	20	2.8	20	94	0	94	37	8	26	26	1.86
284191--284448	127	2.0	130	96	2	486	25	10	23	40	1.86
285766--285798	7	4.7	7	100	0	66	84	0	0	15	0.61
289663--289722	16	3.6	16	69	13	50	23	20	18	38	1.93
294441--294505	34	1.9	34	87	0	94	49	1	23	26	1.59
306418--306524	31	3.4	32	75	15	107	31	17	16	33	1.93
306438--306538	31	3.2	31	76	4	96	30	16	20	31	1.95
309347--309377	14	2.1	15	94	5	55	3	32	0	64	1.09
309931--309991	31	2.0	31	96	3	115	32	6	18	42	1.76
310071--310130	23	2.8	21	87	10	77	21	40	18	20	1.92
310169--310241	20	3.7	20	90	0	110	16	23	23	36	1.94
313422--313482	31	2.0	30	90	3	95	34	6	16	42	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
313562--313621	21	2.9	21	97	0	111	21	41	18	18	1.90
313562--313660	42	2.4	42	81	3	110	23	35	19	22	1.96
316909--316970	31	2.0	31	87	6	90	32	6	14	46	1.70
317050--317131	23	3.7	23	91	6	125	21	39	18	20	1.93
317151--317243	20	4.7	20	91	0	132	17	25	25	31	1.97
318144--318188	11	4.1	11	85	0	63	26	26	20	26	1.99
318837--318938	31	3.3	31	90	2	143	39	22	16	21	1.92
318851--318961	31	3.6	31	88	2	143	41	21	17	19	1.90
321130--321164	2	17.5	2	100	0	70	48	0	0	51	1.00
329094--329159	21	3.2	21	79	14	59	71	3	4	21	1.18
329184--329226	15	2.9	15	86	6	52	79	0	6	13	0.93
329184--329218	16	2.2	16	90	5	54	80	0	8	11	0.92
330594--330653	3	19.3	3	77	13	59	63	3	0	33	1.11
330708--331122	38	11.5	36	75	13	295	45	7	2	43	1.47
330869--331122	70	3.5	73	76	13	192	45	9	2	43	1.48
330796--331112	108	2.9	108	79	10	287	44	8	2	44	1.46
332863--332981	58	2.1	58	90	0	184	24	21	30	23	1.99
333330--333417	24	3.7	24	77	9	63	47	3	6	42	1.47
333498--333537	17	2.5	15	88	8	53	45	0	2	52	1.14
333973--334002	14	2.1	14	100	0	60	36	26	6	30	1.82
335424--335478	26	2.1	26	93	0	92	49	12	10	27	1.74
335591--335661	35	2.0	35	88	0	106	42	12	15	29	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
336224--336256	2	16.5	2	93	0	57	51	3	0	45	1.16
339777--339884	53	2.0	53	98	0	207	36	13	16	33	1.89
340815--340862	24	2.0	24	83	0	60	60	14	10	14	1.59
340836--340881	14	3.3	14	78	0	56	63	15	6	15	1.50
344050--344111	22	2.8	23	78	9	76	40	4	11	43	1.62
344050--344114	21	3.0	23	75	11	73	40	4	12	43	1.63
352683--352818	55	2.7	47	74	19	132	50	2	11	35	1.53
352701--352805	55	1.9	55	90	3	167	52	2	9	35	1.49
352922--352971	18	2.8	18	93	0	91	66	0	8	26	1.19
353271--353298	12	2.3	12	100	0	56	50	14	7	28	1.69
368247--368289	12	3.9	11	79	11	52	51	2	41	4	1.35
369459--369534	40	1.9	39	83	2	98	22	19	38	19	1.94
369319--369679	134	2.7	134	86	3	476	24	19	30	25	1.98
369859--370037	66	2.8	63	77	8	180	37	15	21	25	1.92
370514--370637	66	1.9	66	88	1	187	45	12	12	29	1.78
370988--371059	37	1.9	37	86	5	101	36	12	9	41	1.76
371088--371160	31	2.3	32	86	6	96	41	10	12	35	1.78
371184--371321	36	3.8	36	84	3	172	35	13	17	33	1.89
371355--371426	36	2.0	37	88	2	110	41	11	18	29	1.84
373009--373049	12	3.5	12	81	15	50	0	9	7	82	0.83
378052--378094	12	3.9	11	79	11	52	51	2	41	4	1.35
384579--384751	41	4.3	39	70	16	120	30	18	19	31	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
387468--387509	13	3.6	12	81	15	52	52	2	0	45	1.13
387469--387519	23	2.2	23	85	0	66	49	3	0	47	1.20
398059--398103	22	2.1	22	95	4	83	24	26	24	24	2.00
401689--401790	21	4.9	21	72	10	66	36	21	19	22	1.95
401756--402007	20	12.5	20	76	5	202	37	23	18	20	1.94
401756--402010	40	6.3	40	83	2	280	37	23	18	20	1.94
402867--402944	24	3.2	24	96	0	138	20	20	20	38	1.94
405494--405592	19	5.7	19	72	22	101	44	19	23	13	1.85
405481--405588	33	3.3	33	93	0	189	43	19	24	12	1.86
405588--405664	19	4.3	19	74	15	74	14	14	23	48	1.80

Tables:   1   2   3   4   5   6   7