genome.fa.s1470.2.7.7.80.10.50.1000.7.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001470.1 Hibiscus syriacus cultivar Beakdansim tig00002847_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1178067

Tables:   1   2   3   4   5   6   7   

This is table  7  of  7  ( 779 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1110283--1110327	21	2.1	21	91	0	72	31	26	24	17	1.97
1112010--1112223	104	2.1	103	91	2	340	27	13	22	36	1.91
1112241--1112308	23	3.0	23	91	0	100	20	27	26	25	1.99
1114582--1114619	20	1.9	20	94	0	67	23	18	21	36	1.95
1115731--1115770	21	1.9	21	89	0	62	30	10	10	50	1.69
1120033--1120093	16	3.8	16	95	0	113	40	18	0	40	1.50
1134238--1134283	17	2.7	18	78	18	53	69	0	0	30	0.89
1134680--1134751	30	2.4	29	82	11	83	38	15	5	40	1.70
1137570--1137633	29	2.2	30	85	5	94	29	9	31	29	1.88
1140190--1140229	20	2.0	21	90	5	64	52	10	2	35	1.48
1142502--1142559	13	4.6	12	80	6	62	29	1	1	67	1.11
1142512--1142562	3	16.3	3	80	8	57	27	1	1	68	1.11
1142499--1142562	10	6.8	9	75	8	56	28	1	1	68	1.07
1142512--1142562	13	3.8	13	89	5	75	27	1	1	68	1.11
1142512--1142570	13	4.5	13	85	6	66	27	1	3	67	1.16
1142509--1142560	16	3.2	16	76	17	54	26	1	1	69	1.10
1142630--1142704	25	3.0	25	100	0	150	36	20	16	28	1.93
1144577--1144636	29	2.1	29	83	0	75	13	13	8	65	1.48
1147711--1147786	20	3.5	20	73	20	64	28	27	7	35	1.85
1149636--1149757	4	31.0	4	96	3	230	50	25	0	24	1.50
1150217--1150454	105	2.3	101	83	7	284	30	19	12	37	1.88
1150401--1150518	33	3.4	33	83	6	137	33	20	11	35	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1150401--1150551	69	2.2	67	82	4	176	32	20	11	35	1.89
1150423--1150551	33	3.8	34	82	6	136	34	19	11	34	1.88
1150801--1150902	29	3.7	29	83	7	133	29	8	15	46	1.76
1151003--1151136	28	4.3	31	65	17	87	35	10	12	41	1.78
1151006--1151074	28	2.5	28	90	4	104	34	7	14	43	1.73
1151019--1151148	67	2.0	65	92	3	215	30	11	13	45	1.78
1151024--1151179	67	2.4	65	86	4	213	29	12	13	44	1.80
1151226--1151449	120	1.9	119	80	8	267	29	14	13	41	1.84
1151347--1151471	64	2.0	62	87	3	178	30	14	12	43	1.82
1151453--1151532	40	2.0	40	87	4	117	31	20	11	37	1.87
1151574--1151639	31	2.1	30	83	10	80	34	13	13	37	1.84
1151628--1151671	15	2.9	15	93	0	70	31	20	4	43	1.72
1151694--1151874	100	1.8	98	79	5	211	36	13	11	38	1.82
1152105--1152162	28	2.1	28	87	6	82	25	12	13	48	1.77
1152118--1152186	28	2.4	28	83	7	77	26	13	13	47	1.78
1152212--1152664	40	10.7	41	71	13	253	24	31	19	24	1.98
1152198--1152659	129	3.6	129	89	3	693	24	31	20	23	1.98
1152199--1152621	83	4.9	87	74	15	330	24	30	20	24	1.98
1152212--1152648	86	5.2	84	72	14	319	24	31	19	24	1.98
1152816--1152868	22	2.4	22	75	12	54	28	1	3	66	1.20
1152924--1153048	25	5.0	25	100	0	250	36	20	16	28	1.93
1154912--1154970	28	2.1	29	83	3	75	13	13	8	64	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1157767--1157795	2	15.0	2	92	7	51	51	0	0	48	1.00
1159999--1160043	23	2.0	24	86	8	67	17	4	26	51	1.65
1160971--1160999	2	14.5	2	100	0	58	48	0	0	51	1.00
1161029--1161060	14	2.3	14	100	0	64	46	0	31	21	1.52
1161202--1161273	2	36.5	2	97	2	137	51	0	0	48	1.00
1160815--1161227	226	1.8	223	81	11	507	42	8	14	34	1.75
1163772--1163818	22	2.1	22	96	0	85	19	14	19	46	1.84
1167131--1167189	16	3.4	16	72	19	55	20	23	8	47	1.77
1167263--1167680	111	3.8	112	94	2	709	27	20	15	36	1.93
1167263--1167680	223	1.9	223	93	2	723	27	20	15	36	1.93
1167691--1167871	75	2.4	76	91	0	283	33	19	20	26	1.96
1168542--1168719	22	8.4	22	84	6	242	40	12	14	33	1.83
1168542--1168721	65	2.8	63	93	5	294	40	12	14	32	1.83
1170219--1170318	40	2.6	39	84	7	125	24	24	27	25	2.00
1173631--1173679	17	2.9	17	79	11	64	0	20	0	79	0.73

Tables:   1   2   3   4   5   6   7

The End!