genome.fa.s1480.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001480.1 Hibiscus syriacus cultivar Beakdansim tig00002873_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  157423

Tables:   1   2   

This is table  1  of  2  ( 159 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
241--288	19	2.6	19	93	3	80	31	2	10	56	1.45
400--2327	195	9.9	199	94	4	3343	36	15	16	30	1.90
3776--3864	3	30.0	3	75	2	81	35	5	34	23	1.79
5301--5641	182	1.9	183	90	0	549	35	13	16	34	1.89
8122--8180	23	2.6	23	88	0	91	35	6	20	37	1.79
8122--8189	23	3.0	23	82	8	84	33	5	20	39	1.77
8471--8517	21	2.2	22	77	11	53	38	12	10	38	1.78
8535--8597	23	2.8	23	85	2	83	34	6	20	38	1.78
8535--8606	23	3.2	23	80	9	76	33	5	20	40	1.76
8022--8838	422	1.9	417	94	4	1457	39	8	12	39	1.74
9166--9202	18	2.1	18	89	0	56	32	5	10	51	1.60
9158--9204	24	2.0	24	86	0	67	34	4	14	46	1.64
9458--9542	37	2.2	38	91	4	136	48	21	14	16	1.81
9937--10009	23	3.2	23	86	3	94	34	4	20	41	1.72
11613--11660	19	2.5	19	93	0	78	45	18	16	18	1.85
11563--11681	22	5.7	22	76	6	79	42	21	16	18	1.89
12872--12901	15	2.0	15	93	0	51	50	0	0	50	1.00
23699--23730	16	2.0	16	93	0	55	59	0	0	40	0.97
23734--24336	303	2.0	302	91	1	967	34	15	9	39	1.80
26486--26529	23	1.9	23	90	0	70	50	11	22	15	1.76
29089--29152	21	2.9	22	81	6	67	18	21	26	32	1.97
31693--32358	191	3.5	189	93	3	1078	30	16	9	43	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32761--32797	20	1.9	20	88	5	58	45	8	0	45	1.32
35452--35529	23	3.3	23	81	1	84	33	20	19	26	1.96
35536--35753	103	2.1	103	94	0	382	37	23	13	25	1.91
37133--37182	20	2.4	20	83	6	64	20	30	22	28	1.98
38078--38120	17	2.6	16	78	7	50	39	25	0	34	1.56
40760--40837	23	3.3	23	87	1	111	34	23	17	24	1.96
40844--41061	103	2.1	103	94	0	382	37	22	13	26	1.91
42436--42491	20	2.7	21	91	5	87	21	25	25	28	1.99
48053--48116	12	5.1	12	72	23	60	64	1	0	34	1.03
48128--48167	10	4.0	10	90	0	62	35	0	35	30	1.58
53439--53482	19	2.2	21	80	12	56	47	4	2	45	1.35
53441--53483	20	2.2	20	87	4	61	48	4	2	44	1.36
59732--59761	15	2.0	15	100	0	60	46	0	0	53	1.00
62881--62919	19	2.2	19	86	13	57	51	5	30	12	1.62
63650--63693	22	1.9	24	81	9	56	47	0	2	50	1.13
65836--65876	20	2.0	20	90	0	64	51	4	2	41	1.36
67224--67372	45	3.3	45	87	0	190	13	5	49	31	1.64
67268--67387	45	2.8	43	85	7	149	15	7	45	30	1.74
69341--69410	30	2.3	30	95	0	122	48	5	15	30	1.68
69781--69832	26	1.9	28	81	14	65	42	17	15	25	1.88
82502--82529	2	14.0	2	100	0	56	50	0	0	50	1.00
84172--84206	12	2.9	12	91	0	61	20	34	37	8	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
84946--84986	15	2.7	15	88	7	57	56	4	0	39	1.21
85115--85229	48	2.4	48	98	0	221	48	4	11	35	1.59
85435--85491	24	2.3	26	85	11	75	45	5	8	40	1.58
85529--85619	21	4.3	20	70	22	53	38	4	7	49	1.52
86543--86590	23	2.1	23	92	0	78	39	8	18	33	1.81
86621--86668	23	2.1	23	84	7	62	37	10	18	33	1.85
86502--86668	87	1.9	86	93	1	289	41	12	13	31	1.82
86702--87141	197	2.2	200	81	6	504	31	16	14	37	1.89
86759--87168	200	2.1	198	79	7	422	32	16	14	37	1.89
87048--87244	106	1.9	107	84	1	270	30	16	12	40	1.85
90634--91712	201	5.4	200	89	3	1571	30	15	17	36	1.91
92936--92987	24	2.2	24	82	6	61	51	11	3	32	1.56
94296--94345	3	16.7	3	82	0	64	28	30	2	40	1.68
95472--95522	15	3.4	15	91	0	75	33	1	45	19	1.62
95941--96878	198	4.7	200	94	2	1468	32	15	17	35	1.91
97156--97205	19	2.6	19	93	0	82	58	10	2	30	1.42
98355--98390	17	2.1	17	100	0	72	30	11	8	50	1.67
99366--99421	24	2.4	24	77	14	64	51	8	0	39	1.33
101303--101349	20	2.3	20	75	7	51	14	21	12	51	1.76
101276--102106	182	4.6	181	89	1	1191	27	15	12	43	1.83
102527--102565	11	3.5	11	82	6	51	41	2	2	53	1.28
102532--102572	11	3.6	12	81	18	52	36	2	0	60	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
102809--102862	23	2.3	24	96	3	101	48	9	0	42	1.35
105609--105648	2	20.0	2	100	0	80	50	0	0	50	1.00
106413--106465	21	2.5	21	87	0	79	20	24	20	33	1.97
106455--106542	20	4.4	20	94	0	158	39	17	20	22	1.92
106534--106600	20	3.4	19	81	8	71	31	25	19	23	1.98
106548--106606	20	3.0	20	92	0	91	27	27	22	23	1.99
107204--107254	19	2.7	19	90	6	77	17	19	19	43	1.89
107256--107307	20	2.6	20	90	0	77	17	19	26	36	1.94
107275--107330	20	2.8	20	91	0	85	10	16	23	50	1.76
107294--107337	20	2.2	20	91	0	70	11	13	20	54	1.69
109244--109338	33	2.8	34	79	6	122	44	23	18	13	1.86
109276--109394	53	2.2	53	77	5	125	43	21	18	16	1.88
109313--109358	20	2.3	20	88	0	65	36	26	19	17	1.94
109394--109456	20	3.2	20	83	0	90	23	19	17	39	1.92
110480--110561	21	3.6	21	80	17	101	24	25	30	19	1.98
111255--111410	31	5.0	31	96	1	278	19	19	23	38	1.93
112644--112685	21	2.2	20	87	12	61	21	35	16	26	1.94
112667--112760	42	2.2	42	83	3	109	23	37	18	21	1.94
112667--112760	21	4.5	21	69	7	66	23	37	18	21	1.94
114132--114167	14	2.6	14	90	0	54	30	0	22	47	1.52
114284--114367	33	2.5	33	90	0	123	45	16	22	15	1.85
114418--114464	20	2.3	20	92	7	78	17	21	25	36	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
114381--114483	54	1.9	54	84	4	136	15	21	23	39	1.91
117817--117875	20	2.9	20	92	2	100	23	22	28	25	1.99
117864--117933	20	3.5	20	92	1	115	21	21	20	37	1.95
117930--117975	21	2.2	21	96	0	83	36	21	26	15	1.93
118545--118596	21	2.5	21	81	3	61	38	19	25	17	1.93
118585--118719	20	6.7	20	79	7	112	33	23	17	25	1.96
118582--118713	61	2.2	61	85	0	174	35	23	16	24	1.95
118887--118930	22	2.0	22	95	0	79	20	45	15	18	1.85
119190--119249	20	3.0	20	82	0	66	20	18	18	43	1.88
119383--119437	25	2.2	24	78	15	58	20	9	18	52	1.71
120566--120610	18	2.5	18	88	0	72	26	44	15	13	1.83
121092--121158	20	3.4	20	81	2	73	38	23	22	14	1.92
121130--121194	33	2.0	33	96	3	123	44	21	18	15	1.86
121207--121275	25	2.6	28	73	19	76	21	10	15	52	1.73
123041--123076	14	2.6	14	90	0	54	30	0	22	47	1.52
123159--123197	20	2.0	20	94	0	69	46	30	10	12	1.75
123190--123243	14	3.5	14	75	22	54	46	20	22	11	1.82
123203--123248	14	2.8	17	75	25	53	45	19	21	13	1.84
123274--123343	20	3.5	20	94	1	124	15	22	27	34	1.95
123554--123604	20	2.5	20	93	0	84	21	29	17	31	1.96
124347--124400	24	2.2	24	90	0	81	22	16	20	40	1.91
124575--124599	12	2.1	12	100	0	50	72	0	28	0	0.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
126890--127020	19	7.7	19	66	23	94	42	19	22	14	1.88
126890--127016	33	3.8	33	88	4	202	42	19	22	14	1.88
126891--127023	66	2.0	66	97	0	248	41	19	22	16	1.90
127016--127057	19	2.2	19	86	0	57	16	19	21	42	1.89
127033--127091	19	3.4	19	71	22	65	13	22	18	45	1.84
127028--127091	33	1.9	33	93	0	110	12	23	18	45	1.84
127198--127234	14	2.6	14	91	0	65	45	24	0	29	1.53
128591--128793	42	4.8	41	72	9	140	23	17	36	22	1.95
128591--128657	21	3.2	21	68	4	55	19	20	35	23	1.95
128629--128793	84	2.0	84	98	0	321	23	16	37	22	1.93

Tables:   1   2