genome.fa.s1701.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001701.1 Hibiscus syriacus cultivar Beakdansim tig00003403_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  790467

Tables:   1   2   3   4   

This is table  1  of  4  ( 470 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4307--4351	19	2.4	19	84	0	63	17	26	33	22	1.96
4545--4575	6	5.2	6	100	0	62	16	19	16	48	1.81
5319--5594	117	2.4	117	93	0	471	18	14	33	33	1.91
6916--6949	3	11.0	3	93	6	59	67	0	0	32	0.91
8017--8063	21	2.2	21	92	0	76	27	14	31	25	1.95
8373--8397	13	1.9	13	100	0	50	60	0	0	40	0.97
10030--10081	26	2.0	26	100	0	104	34	26	19	19	1.95
10219--10963	371	2.0	371	90	0	1157	33	13	16	36	1.87
12961--13072	3	37.3	3	96	0	170	33	5	0	60	1.19
17148--17187	14	2.8	15	88	7	57	25	7	27	40	1.82
20803--20917	51	2.3	51	83	7	144	14	32	28	24	1.95
20879--20956	41	2.0	40	85	10	106	15	35	28	20	1.93
24496--24582	35	2.5	34	80	12	97	55	10	8	26	1.61
25157--25196	18	2.2	18	90	0	62	22	20	32	25	1.98
27096--27195	51	2.0	51	80	7	114	24	31	31	14	1.94
30777--30809	2	16.5	2	100	0	66	51	0	0	48	1.00
31936--32000	21	3.0	21	77	11	60	46	1	4	47	1.32
32044--32069	2	13.0	2	100	0	52	50	0	0	50	1.00
33621--33662	21	2.0	21	81	9	50	54	0	2	42	1.13
33837--33870	14	2.4	15	90	9	54	70	0	2	26	1.01
35265--35321	3	17.7	3	82	7	51	68	1	1	28	1.09
35263--35321	19	3.4	16	77	20	57	67	1	1	28	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35503--35935	45	9.5	45	88	1	578	32	19	22	24	1.98
35503--36056	135	4.2	134	82	7	627	33	20	22	24	1.97
35838--36128	117	2.4	118	86	5	379	33	21	19	25	1.97
36017--36197	72	2.5	73	90	0	292	31	20	19	27	1.97
35838--36162	117	2.7	119	83	7	300	33	21	19	25	1.97
37223--37326	54	1.9	54	90	0	163	28	25	13	32	1.93
40628--40689	32	1.9	32	86	0	88	20	16	16	46	1.83
41252--41291	14	2.8	14	88	11	55	2	12	0	85	0.71
41252--41299	9	5.6	8	80	11	51	2	14	0	83	0.74
41251--41299	17	2.9	16	79	11	53	4	14	0	81	0.83
41264--41316	16	3.4	15	76	7	52	1	20	0	77	0.87
41264--41308	23	2.0	23	86	0	63	2	20	0	77	0.87
41265--41315	23	2.2	23	82	0	57	1	21	0	76	0.88
43611--43666	27	2.1	26	83	3	67	62	8	10	17	1.52
45784--45849	26	2.7	25	73	17	68	63	1	4	30	1.23
46453--46510	29	1.9	29	86	6	80	63	1	1	32	1.14
46485--46536	22	2.3	21	77	9	50	57	1	1	38	1.21
47839--48301	112	4.1	112	90	0	730	44	11	13	30	1.80
48883--48915	12	2.8	12	95	0	57	18	27	39	15	1.90
50703--50764	22	2.8	22	90	0	88	20	37	19	22	1.95
51120--51158	20	2.0	20	94	0	69	53	20	10	15	1.70
52680--52775	42	2.3	42	81	0	111	30	33	16	19	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52893--52945	21	2.5	21	81	0	61	18	11	32	37	1.87
52898--53016	63	1.9	63	80	3	141	20	11	33	34	1.89
53316--53432	21	5.6	21	77	8	112	22	35	17	23	1.95
53318--53435	63	1.9	62	84	5	157	21	38	17	22	1.93
53314--53432	42	2.8	41	86	5	166	21	36	17	24	1.95
57207--57260	24	2.2	24	93	0	90	40	20	18	20	1.91
58001--58038	16	2.5	15	84	12	51	65	0	5	28	1.14
58176--58210	18	1.9	18	94	0	61	48	5	20	25	1.71
58269--58365	40	2.4	40	80	14	101	28	16	26	27	1.97
58337--58410	20	3.5	22	76	12	68	25	9	28	36	1.87
63373--63866	81	6.1	81	90	0	742	31	23	11	33	1.90
64033--64213	57	3.2	56	79	3	202	34	16	9	38	1.82
64030--64211	55	3.3	55	75	8	188	35	16	9	38	1.81
64367--64576	46	4.6	46	90	0	330	21	23	9	45	1.81
64401--64602	26	8.5	26	70	18	170	21	23	8	45	1.80
64471--64548	20	3.6	20	73	18	75	20	25	10	43	1.83
64604--64636	2	16.5	2	100	0	66	48	0	0	51	1.00
65060--65121	22	2.9	22	95	2	108	30	16	14	38	1.88
67619--67672	22	2.5	21	88	5	81	24	27	24	24	2.00
68463--68492	12	2.5	12	94	0	51	16	26	23	33	1.96
75080--75109	14	2.1	14	100	0	60	46	0	0	53	1.00
75762--75794	15	2.2	15	94	0	57	39	12	18	30	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
75918--75949	6	5.3	6	92	0	55	31	0	37	31	1.58
80891--80951	24	2.5	24	86	0	86	8	8	24	59	1.54
80891--80965	24	3.1	24	82	0	69	10	8	21	60	1.55
80890--80965	38	2.0	38	87	5	109	10	9	21	59	1.58
81740--81791	11	4.6	11	90	4	86	26	17	26	28	1.97
81740--81791	23	2.3	22	90	3	86	26	17	26	28	1.97
82024--82088	16	4.1	16	91	0	103	7	13	24	53	1.66
82337--82382	22	2.0	23	83	8	58	28	6	8	56	1.54
82388--82585	89	2.2	91	88	2	294	38	13	13	34	1.84
86416--86551	43	3.2	43	84	2	184	41	22	19	16	1.90
92778--92816	13	2.9	13	96	3	69	71	0	7	20	1.10
93992--94115	26	5.0	25	74	7	126	39	12	5	42	1.66
93986--94109	24	5.0	24	77	11	133	41	11	4	42	1.62
93986--94115	50	2.6	50	93	0	224	39	11	5	43	1.64
94076--94171	38	2.6	35	80	12	113	42	10	4	42	1.58
94146--94190	22	2.1	22	91	4	74	48	11	0	40	1.39
106192--106229	19	2.0	20	89	5	60	71	0	7	21	1.11
106253--106313	20	2.9	21	80	9	70	72	0	6	21	1.07
107181--107328	38	3.9	38	91	1	226	41	10	2	45	1.53
107181--107345	76	2.2	76	88	4	246	41	10	3	44	1.55
108242--108272	15	2.1	15	93	0	53	25	9	19	45	1.81
108360--108386	10	2.7	10	100	0	54	37	0	11	51	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
109838--109997	65	2.5	65	87	5	218	28	15	22	33	1.95
116553--116592	21	1.9	21	90	10	64	37	7	0	55	1.29
118518--118676	64	2.5	63	78	8	169	28	17	23	29	1.97
120556--120593	3	12.7	3	100	0	76	65	0	0	34	0.93
120592--120616	3	8.3	3	100	0	50	32	0	0	68	0.90
121238--121406	28	5.5	28	65	20	86	43	13	18	24	1.85
121106--121420	64	4.9	64	85	3	389	42	13	19	23	1.87
121436--121533	37	2.7	36	87	6	126	45	14	14	25	1.82
121869--121902	16	2.1	16	94	0	59	23	0	26	50	1.50
126350--126399	22	2.2	23	82	10	59	54	6	0	40	1.25
128874--128925	3	17.3	3	100	0	104	67	0	0	32	0.91
129535--129571	17	2.1	18	90	5	58	32	0	2	64	1.07
135194--135238	2	22.5	2	95	0	81	0	53	0	46	1.00
136139--136163	2	12.5	2	100	0	50	52	0	0	48	1.00
140507--140621	58	2.0	58	96	0	212	30	18	13	37	1.90
147514--147564	7	7.3	7	100	0	102	27	29	15	27	1.96
147862--147930	7	9.9	7	96	0	129	28	30	14	26	1.95
148594--148634	16	2.7	16	85	7	59	31	2	0	65	1.05
149439--149508	3	23.3	3	85	0	95	4	30	28	37	1.76
151259--151302	17	2.7	17	89	6	65	59	4	0	36	1.18
151272--151320	24	2.0	24	88	7	73	59	2	0	38	1.09
151272--151310	7	5.1	7	85	14	51	56	2	0	41	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
152573--152670	29	3.1	32	83	16	118	39	6	19	34	1.76
152590--152670	29	2.8	30	88	5	130	41	4	18	34	1.72
156330--156376	21	2.2	21	92	7	78	46	8	8	36	1.65
159809--159871	31	2.0	31	100	0	126	31	9	31	26	1.88
160424--160537	29	3.6	34	80	17	106	37	7	20	35	1.80
160441--160549	29	3.8	29	93	4	186	38	5	22	33	1.77
160441--160549	57	1.9	58	92	5	186	38	5	22	33	1.77
164578--164696	16	7.4	16	92	0	175	20	21	12	45	1.84
164952--165001	23	2.1	24	92	3	84	48	0	2	50	1.12
165478--165555	19	4.1	19	79	15	81	28	25	0	46	1.53

Tables:   1   2   3   4