genome.fa.s1701.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001701.1 Hibiscus syriacus cultivar Beakdansim tig00003403_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  790467

Tables:   1   2   3   4   

This is table  4  of  4  ( 470 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
506977--507720	251	3.0	249	90	2	1152	29	16	17	36	1.92
507592--507698	42	2.6	42	83	4	110	23	19	21	35	1.96
507959--508016	17	3.3	19	79	16	70	43	0	1	55	1.10
507959--508024	16	3.9	17	74	16	66	45	0	1	53	1.09
507978--508026	13	3.4	14	86	13	64	48	0	0	51	1.00
512270--512344	21	3.6	21	75	12	82	30	29	13	26	1.94
516780--517086	43	7.1	43	73	10	200	26	18	20	34	1.96
517068--517159	44	2.1	44	83	2	114	30	20	22	26	1.98
517424--517474	21	2.3	23	90	9	81	0	37	21	41	1.54
517424--517478	20	2.7	20	86	8	67	0	38	20	41	1.52
524713--524834	42	3.0	40	72	17	106	35	19	11	33	1.88
526114--526211	41	2.4	42	89	5	148	31	19	17	31	1.95
526313--526443	42	3.1	41	72	12	124	29	21	12	36	1.91
526321--526446	41	3.0	40	71	13	112	28	21	13	36	1.91
526293--526446	83	1.9	82	89	4	238	27	20	13	38	1.90
527990--528031	21	2.0	21	90	4	68	38	19	16	26	1.92
531310--531355	23	2.0	23	91	0	74	63	10	0	26	1.27
536601--536661	15	3.9	15	76	23	56	72	1	3	22	1.09
536601--536661	31	2.0	31	84	12	81	72	1	3	22	1.09
536618--536667	15	3.3	15	74	20	50	70	0	4	26	1.05
536707--536749	18	2.4	18	92	0	68	72	0	6	20	1.08
536924--537392	200	2.3	200	86	1	654	25	20	20	33	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
537729--538213	42	11.3	41	65	12	170	20	23	25	30	1.99
537467--538268	86	9.3	86	90	1	1214	20	22	25	31	1.98
541474--541519	16	2.9	16	86	0	65	23	39	6	30	1.80
542397--542463	22	3.2	20	71	20	66	70	1	5	22	1.18
542478--542530	20	2.7	20	86	11	74	77	1	3	16	1.01
542574--542616	18	2.4	18	88	0	59	69	2	6	20	1.23
545930--546057	30	4.3	30	75	0	121	35	16	20	28	1.94
548148--548204	23	2.5	23	85	0	69	36	19	26	17	1.94
554636--554721	28	3.1	28	94	0	154	36	23	15	25	1.94
561419--561470	20	2.6	20	93	0	86	19	40	21	19	1.92
564772--564830	24	2.5	23	81	13	75	37	22	23	16	1.94
564821--564876	23	2.4	23	78	0	67	37	21	21	19	1.94
564839--564916	23	3.3	24	78	7	72	35	20	20	23	1.96
564861--564916	24	2.4	24	81	3	69	35	19	21	23	1.96
564861--564923	23	2.7	24	80	2	74	36	19	22	22	1.95
594032--594381	179	2.0	177	97	2	666	34	15	25	24	1.95
599627--599664	14	2.7	14	91	0	58	47	5	36	10	1.61
601064--601122	30	2.0	30	86	6	84	42	10	8	38	1.69
607674--607757	43	2.0	43	90	0	132	36	19	19	25	1.94
615903--615968	21	3.3	21	70	12	75	50	18	7	24	1.72
616015--616059	13	3.6	12	79	8	54	24	26	0	48	1.51
616092--616164	37	1.9	38	86	8	105	35	19	5	39	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
616091--616160	18	3.8	18	75	5	61	34	18	5	41	1.74
616110--616171	19	3.3	19	73	13	56	33	17	6	41	1.75
619528--619583	23	2.4	23	93	0	94	32	12	19	35	1.89
623032--623071	16	2.8	13	82	17	53	37	20	20	22	1.94
631547--631627	37	2.1	37	90	4	126	51	16	4	27	1.64
631747--631824	19	4.2	19	78	3	59	30	17	8	42	1.81
634601--634629	14	2.0	15	93	6	51	51	6	0	41	1.28
634956--634998	12	3.7	12	87	3	52	32	2	0	65	1.06
635022--635328	36	8.5	35	73	15	179	45	3	6	44	1.47
635011--635292	36	7.8	35	77	10	216	45	3	6	45	1.46
635010--635324	144	2.2	145	79	14	337	45	3	6	44	1.46
635333--635373	14	2.9	14	88	3	55	31	0	4	63	1.15
636519--636605	22	4.0	21	75	16	70	17	4	1	77	1.01
636533--636603	13	5.9	12	75	15	58	18	5	0	76	0.98
636545--636652	45	2.3	48	79	14	113	15	8	0	75	1.09
636516--636605	7	12.1	7	70	15	56	17	4	1	76	1.01
636580--636622	20	2.2	20	83	8	52	11	9	2	76	1.10
636665--636739	26	3.0	25	74	14	82	20	5	5	69	1.28
639339--639592	95	2.7	94	86	4	350	31	16	19	31	1.95
640382--641070	80	8.5	80	88	2	914	33	23	20	22	1.98
640378--641146	80	9.4	84	85	4	435	33	22	20	23	1.97
641841--641876	2	18.0	2	100	0	72	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
641883--642084	36	5.6	36	77	7	151	45	2	6	44	1.45
641889--642084	35	5.5	36	78	8	177	45	3	6	44	1.45
642111--642197	24	3.6	24	73	17	67	41	3	5	49	1.43
642104--642173	36	2.0	36	83	5	90	42	4	4	48	1.42
642192--642239	17	3.0	17	80	19	59	39	0	4	56	1.19
643388--643459	10	6.9	10	76	14	56	13	2	1	81	0.86
643368--643454	27	3.5	25	78	17	69	14	3	1	80	0.90
643369--643434	26	2.5	26	83	9	82	16	4	1	77	1.01
643589--643619	3	10.3	3	92	0	53	29	3	0	67	1.06
647787--647818	16	1.9	17	93	6	57	3	9	0	87	0.64
650529--650568	20	2.0	20	90	0	62	80	12	5	2	0.98
662871--662909	19	2.2	18	86	9	53	15	2	2	79	0.95
666000--666042	17	2.5	17	96	0	77	44	9	13	32	1.76
676695--676743	6	8.2	6	97	0	80	4	51	12	32	1.58
677014--677151	73	1.9	73	92	3	233	38	2	13	46	1.55
679779--679882	43	2.4	43	85	0	136	29	12	17	40	1.86
679807--679891	43	2.0	43	90	0	134	31	16	16	35	1.91
680152--680207	21	2.7	21	88	5	78	48	23	7	21	1.74
681393--681440	14	3.4	14	83	13	55	27	25	22	25	2.00
686799--686900	24	4.2	24	75	9	73	25	5	17	50	1.68
695698--695777	22	3.7	22	83	1	99	23	18	27	30	1.98
697197--697273	32	2.4	32	93	0	127	27	20	19	32	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
698083--698117	16	2.2	16	89	0	52	17	14	31	37	1.89
705537--705561	12	2.1	12	100	0	50	16	28	24	32	1.96
707570--707596	2	13.5	2	100	0	54	48	0	0	51	1.00
707650--707687	2	19.0	2	100	0	76	50	0	0	50	1.00
707756--707797	13	3.2	13	89	0	57	42	11	16	28	1.84
707852--707903	13	4.0	13	87	0	77	32	19	21	26	1.97
707707--707893	96	1.9	96	83	2	241	32	15	19	33	1.93
712968--713032	35	2.0	32	82	14	80	43	16	3	36	1.64
713574--713862	41	7.1	41	80	2	260	37	17	17	27	1.93
713574--713861	122	2.3	122	84	5	355	37	17	17	27	1.92
713639--713862	81	2.8	80	82	4	261	36	17	17	28	1.93
759516--759558	13	3.2	13	83	6	59	48	9	9	32	1.67
763300--763357	5	11.4	5	83	10	55	56	0	20	22	1.42
769003--769035	16	2.0	17	88	5	50	21	3	0	75	0.93
769009--769047	19	2.1	19	90	9	62	17	2	0	79	0.84
772012--772203	102	1.9	102	92	0	321	25	18	27	29	1.98
778765--778866	51	2.0	51	100	0	204	33	15	23	27	1.95
784093--784127	17	2.1	17	100	0	70	45	34	5	14	1.68
786805--786878	37	2.0	36	82	12	89	48	4	2	44	1.35
788486--788720	54	4.4	54	88	4	314	35	20	17	26	1.94
788486--788720	108	2.2	108	89	1	355	35	20	17	26	1.94
789426--789457	11	2.9	11	95	0	55	71	0	0	28	0.86

Tables:   1   2   3   4

The End!