genome.fa.s1965.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001965.1 Hibiscus syriacus cultivar Beakdansim tig00003969_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  250570

Tables:   1   2   

This is table  2  of  2  ( 183 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
195492--195567	31	2.5	31	84	0	98	47	14	6	31	1.70
196843--196914	31	2.3	31	80	0	81	37	11	12	38	1.79
198000--198064	20	3.2	20	95	0	112	40	21	18	20	1.92
198069--198130	20	3.1	20	76	0	70	43	17	16	22	1.87
198684--198717	14	2.4	14	90	0	50	8	17	20	52	1.71
198666--198732	20	3.7	20	71	22	74	8	20	22	47	1.78
200388--200487	42	2.4	41	75	8	103	17	13	38	32	1.87
200840--200942	42	2.5	42	76	9	120	26	34	17	21	1.95
200845--200942	21	4.7	22	72	14	82	26	34	18	20	1.95
202242--202402	66	2.4	66	86	9	213	27	2	17	52	1.58
202274--202402	66	2.0	66	92	3	217	29	1	18	50	1.56
202457--202525	20	3.5	20	85	0	102	42	26	15	15	1.88
202876--202911	18	2.0	18	94	0	63	16	2	22	58	1.51
205967--206004	16	2.5	15	84	12	51	65	0	5	28	1.14
206012--206052	22	1.9	21	90	5	64	26	9	39	24	1.86
206141--206187	18	2.6	18	82	3	58	31	14	23	29	1.95
206161--206251	20	4.7	20	79	8	89	28	13	23	35	1.92
206161--206251	39	2.3	40	83	3	105	28	13	23	35	1.92
206219--206282	20	3.2	20	79	16	71	17	17	25	40	1.90
217201--217254	27	2.0	27	88	0	81	5	59	9	25	1.50
217382--217466	8	11.2	8	76	9	56	25	1	2	70	1.06
217382--217440	24	2.5	24	85	0	82	28	1	1	67	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
217631--217678	23	2.1	23	84	7	62	39	0	0	60	0.97
221155--221202	23	2.1	23	96	0	87	41	4	20	33	1.72
221161--221209	23	2.1	23	92	3	80	46	6	14	32	1.69
222603--222971	20	18.5	20	84	4	449	34	26	18	19	1.95
223643--223689	24	2.0	24	87	8	69	25	14	21	38	1.92
223864--223888	12	2.1	12	100	0	50	72	0	28	0	0.86
226195--226629	19	24.4	19	82	13	570	46	17	20	14	1.83
226223--226651	161	2.7	161	98	0	813	46	17	21	14	1.83
226223--226651	52	8.0	52	91	5	696	46	17	21	14	1.83
226658--226759	19	5.6	19	85	12	151	14	23	17	44	1.86
226866--226902	14	2.6	14	91	0	65	45	21	0	32	1.52
226897--226969	12	6.0	12	67	20	53	57	16	1	24	1.47
226883--226955	38	1.9	38	97	0	137	53	16	1	28	1.51
228773--228871	19	5.4	19	77	12	91	45	26	18	10	1.80
228829--228885	14	3.7	14	77	20	60	45	24	21	8	1.80
228810--228901	33	2.8	33	96	1	168	46	22	20	9	1.80
228902--229030	19	7.3	19	75	17	125	8	17	28	45	1.77
228902--228993	33	2.8	33	93	3	150	7	18	28	45	1.76
229074--229453	93	4.1	93	98	0	735	46	18	12	22	1.83
229074--229453	185	2.0	186	98	0	735	46	18	12	22	1.83
231160--231249	14	5.7	14	74	23	81	42	23	25	8	1.83
231152--231266	33	3.5	33	95	0	212	45	20	24	9	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
231159--231271	19	6.8	18	72	23	88	43	22	24	9	1.83
231283--231337	14	3.6	14	73	21	56	9	25	23	41	1.83
231267--231337	33	2.2	33	94	0	124	8	22	25	43	1.81
231278--231359	33	2.5	33	89	2	119	9	25	21	42	1.84
231290--231378	20	4.8	20	72	19	75	12	24	19	43	1.85
231460--231527	33	2.1	33	94	0	118	47	20	22	10	1.80
231709--231763	22	2.5	22	81	0	74	20	16	40	23	1.91
231909--232102	20	9.6	20	82	5	221	19	19	25	35	1.95
231909--232102	60	3.2	60	83	0	253	19	19	25	35	1.95
232095--232171	21	3.7	20	70	13	57	27	16	23	32	1.96
232157--232208	20	2.6	20	96	0	95	21	13	26	38	1.90
233413--233492	3	26.7	3	100	0	160	33	0	0	66	0.92
240401--240445	22	2.0	23	83	12	58	51	2	0	46	1.13
240512--240587	33	2.3	34	82	11	95	50	0	1	48	1.09
240524--240574	22	2.3	22	83	10	59	49	0	1	49	1.12
240536--240597	33	1.9	32	93	3	106	51	0	1	46	1.10
240817--240859	13	3.2	13	84	12	52	58	0	4	37	1.19
242305--242364	26	2.2	26	82	11	68	48	1	1	48	1.21
242351--243186	342	2.5	340	91	4	1327	43	6	4	44	1.52

Tables:   1   2

The End!