genome.fa.s1985.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001985.1 Hibiscus syriacus cultivar Beakdansim tig00004046_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  712196

Tables:   1   2   3   4   

This is table  4  of  4  ( 431 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
580098--580145	22	2.1	23	85	11	64	35	6	4	54	1.45
583473--583513	16	2.6	16	88	3	57	34	21	7	36	1.82
583767--583873	36	2.9	36	83	9	137	45	3	7	42	1.50
583714--583863	36	3.9	37	75	12	117	45	6	8	40	1.60
583856--583890	17	2.1	17	100	0	70	48	0	11	40	1.39
583873--584035	37	4.4	37	82	15	155	43	0	8	47	1.34
583875--584035	74	2.2	73	87	8	229	42	0	8	48	1.34
583815--583979	89	1.9	88	85	9	230	44	1	8	45	1.42
583875--584082	74	2.8	73	79	7	206	42	2	8	47	1.46
584082--584137	5	11.2	5	80	17	55	35	0	0	64	0.94
584084--584144	31	1.9	31	87	9	88	36	0	0	63	0.94
584079--584145	28	2.5	27	76	7	75	34	0	0	65	0.93
587734--587764	14	2.2	14	100	0	62	6	35	25	32	1.82
590388--590796	85	4.8	85	87	3	529	35	19	17	27	1.94
591964--592092	50	2.6	49	82	10	172	36	23	17	23	1.94
591948--592092	50	2.9	49	81	9	161	36	22	16	24	1.94
604173--604213	14	2.7	16	75	24	52	53	9	7	29	1.60
604807--604845	20	1.9	21	84	5	53	28	7	10	53	1.62
607474--607514	22	1.9	22	85	5	57	29	9	9	51	1.67
610200--610245	21	2.2	21	88	0	65	21	4	6	67	1.32
610545--610577	2	16.5	2	100	0	66	51	0	0	48	1.00
629729--629753	12	2.1	12	100	0	50	16	48	28	8	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
630449--630533	41	2.1	41	86	4	118	21	23	31	23	1.98
639780--639852	30	2.4	30	95	0	128	32	24	17	24	1.97
639780--639879	30	3.3	30	87	1	83	34	25	18	23	1.96
644542--644614	30	2.4	30	93	0	119	31	24	19	24	1.98
644600--644664	31	2.1	31	85	0	85	33	23	18	24	1.96
657209--657238	6	5.0	6	100	0	60	50	33	16	0	1.46
662765--662828	3	22.0	3	78	12	71	67	1	3	28	1.15
662767--662829	32	2.0	32	90	6	101	66	3	3	26	1.22
662979--663448	40	10.9	44	72	13	228	24	19	32	23	1.97
663242--663446	46	4.7	45	75	11	174	25	19	31	23	1.98
663093--663439	129	2.7	129	93	3	579	24	18	32	24	1.97
663068--663479	86	4.7	85	72	13	270	24	18	32	24	1.97
663505--663567	28	2.2	28	86	5	83	44	12	14	28	1.82
663525--663600	28	2.6	28	82	14	93	46	11	15	26	1.81
663602--663791	66	2.9	65	71	11	154	37	14	18	29	1.90
664201--664280	40	2.0	40	90	4	126	36	11	21	31	1.88
664262--664388	66	1.9	65	88	1	191	42	11	14	32	1.80
664284--664509	120	1.9	121	81	6	280	42	12	14	30	1.83
664621--664747	37	3.6	36	69	16	106	44	11	11	32	1.76
664568--664779	67	3.3	66	84	6	256	45	12	11	30	1.77
664735--664791	27	2.1	27	93	0	96	45	15	7	31	1.73
664893--665106	56	3.9	54	86	6	279	44	15	11	28	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
664893--665110	83	2.6	83	87	2	305	45	15	11	27	1.81
664893--665110	27	7.9	27	87	6	278	45	15	11	27	1.81
665354--665445	36	2.6	36	82	3	116	36	13	19	30	1.90
665535--665652	36	3.3	35	82	9	148	36	12	16	34	1.86
666200--666246	4	12.2	4	91	8	80	25	0	25	48	1.51
667422--667473	17	3.2	17	76	15	56	1	23	5	69	1.20
670530--670591	32	2.0	32	96	3	117	61	9	14	14	1.57
674447--674507	3	21.0	3	77	12	65	67	1	3	27	1.16
679478--679577	37	2.7	37	87	0	137	44	14	11	31	1.79
680049--680141	19	4.6	19	69	22	57	33	3	2	61	1.24
680445--680525	16	5.2	16	67	16	53	16	12	0	71	1.14
684972--685016	17	2.6	16	83	13	54	75	6	17	0	1.01
684981--685045	20	3.4	19	75	12	62	80	4	13	1	0.95
684972--685023	17	3.0	17	76	13	52	76	5	17	0	0.97
686603--687870	106	12.0	106	88	1	1827	33	24	18	22	1.97
686603--687870	317	4.0	317	92	0	1963	33	24	18	22	1.97
686603--687870	423	3.0	421	89	2	1888	33	24	18	22	1.97
688567--688673	37	2.9	37	81	0	124	40	15	14	29	1.87
689537--689615	12	6.4	13	70	14	51	17	10	0	72	1.12
689544--689610	24	2.8	23	81	6	71	16	8	0	74	1.05
690848--690915	28	2.4	28	100	0	136	41	0	14	44	1.45
694997--695178	86	2.1	86	96	0	337	38	15	15	30	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
709275--709302	14	2.0	14	100	0	56	35	0	42	21	1.53
709641--709681	19	2.1	19	86	4	55	51	7	7	34	1.58
711157--711205	2	26.0	2	88	12	77	48	0	0	51	1.00
711160--711205	13	3.5	13	85	11	67	47	0	0	52	1.00
711157--711205	17	2.9	17	96	3	91	48	0	0	51	1.00

Tables:   1   2   3   4

The End!