genome.fa.s1989.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001989.1 Hibiscus syriacus cultivar Beakdansim tig00004063_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  499561

Tables:   1   2   3   

This is table  2  of  3  ( 278 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
218359--218697	118	2.8	118	85	4	421	30	10	20	37	1.86
218794--219212	207	2.0	209	98	1	815	31	11	23	33	1.90
225191--225225	7	5.0	7	92	0	61	42	11	0	45	1.40
225786--225899	44	2.6	44	88	2	158	34	19	16	29	1.94
225748--226443	350	2.0	354	82	3	857	33	19	16	30	1.94
226308--226731	177	2.4	179	82	2	485	33	15	17	32	1.92
227959--228081	7	17.6	7	80	9	101	0	21	0	77	0.82
227960--228083	14	8.9	14	78	14	123	0	21	0	77	0.82
239154--239194	21	2.0	21	85	9	57	56	9	7	26	1.58
245074--245108	16	2.2	16	100	0	70	11	31	0	57	1.34
254206--254268	21	3.0	21	79	9	67	30	20	23	25	1.99
254185--254271	20	4.3	19	76	11	75	28	19	24	27	1.98
261880--262088	106	2.0	106	90	1	330	27	8	24	39	1.84
266279--266411	21	6.4	21	76	4	110	30	15	21	32	1.94
266259--266396	62	2.2	62	84	0	186	31	15	21	31	1.94
268656--268718	3	22.0	3	77	9	69	69	1	28	0	0.97
268657--268717	17	3.6	17	95	0	113	70	1	27	0	0.97
269190--269232	20	2.1	21	87	8	63	41	4	9	44	1.57
270686--270740	22	2.5	22	90	0	92	32	23	18	25	1.97
272522--272589	34	2.0	34	97	0	127	7	27	11	52	1.64
272556--272637	41	2.0	42	83	7	105	8	32	8	50	1.63
276294--276334	2	22.0	2	80	14	52	43	0	2	53	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
277496--277541	18	2.5	19	82	3	58	39	0	15	45	1.46
278845--278912	22	3.0	22	75	21	61	36	11	5	45	1.65
278955--279054	44	2.3	42	83	13	114	52	4	4	40	1.39
279281--279381	54	1.9	52	83	4	130	45	8	2	42	1.50
278903--279716	392	2.1	389	81	6	930	48	8	4	38	1.52
278903--279716	194	4.2	195	80	7	862	48	8	4	38	1.52
280011--280051	21	1.9	22	85	5	57	36	4	19	39	1.73
280712--280764	20	2.5	21	90	6	81	22	16	24	35	1.95
283284--283315	17	1.9	16	93	6	55	56	0	0	43	0.99
283638--283684	20	2.3	20	82	7	60	53	0	2	44	1.12
283833--283859	14	1.9	14	100	0	54	44	7	7	40	1.60
284849--284901	19	2.8	19	76	0	61	39	0	13	47	1.43
290042--290328	58	4.9	58	83	5	321	37	7	11	43	1.70
290228--290413	101	1.8	101	82	4	241	37	6	9	46	1.63
293548--293623	28	2.8	28	87	2	118	18	9	31	40	1.82
293554--293642	28	3.2	28	85	0	106	15	8	30	44	1.77
294263--294316	27	2.0	27	100	0	108	48	25	7	18	1.74
294253--294335	27	2.7	32	75	21	95	43	31	9	15	1.79
294583--294630	21	2.3	21	100	0	96	45	18	14	20	1.85
298259--298467	67	3.0	68	61	28	150	29	11	24	34	1.90
298191--298467	139	2.0	138	96	3	513	28	11	24	35	1.90
301344--301406	22	2.8	22	83	7	65	23	34	23	17	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
301790--301838	26	2.0	26	88	8	75	53	4	4	38	1.39
315720--315819	2	53.0	2	71	11	77	51	0	0	49	1.00
315720--315821	38	2.8	37	76	4	116	51	0	0	48	1.00
318530--318630	1	101.0	1	84	0	130	92	0	0	6	0.44
318530--318633	36	2.9	35	90	4	154	91	0	0	7	0.47
318711--318764	28	1.9	28	85	7	74	68	0	5	25	1.11
320147--320254	43	2.6	43	89	7	161	21	14	26	37	1.92
320394--320714	85	3.8	85	82	8	377	26	18	19	36	1.94
320778--321240	124	4.0	110	83	9	419	24	14	25	35	1.93
320887--321243	124	2.9	124	89	1	554	23	14	25	35	1.93
322232--322488	95	2.7	94	83	7	304	34	16	16	32	1.92
327151--327190	21	1.9	21	100	0	80	15	25	32	27	1.95
327798--327879	29	2.8	29	78	10	94	53	19	3	23	1.61
327809--327859	15	3.5	15	74	15	52	56	23	0	19	1.42
329848--329918	23	3.3	22	83	11	76	22	21	33	22	1.97
335677--335715	19	2.0	20	90	5	62	15	25	33	25	1.95
335751--335789	20	2.0	19	95	5	69	10	28	30	30	1.90
336104--336230	7	17.4	7	70	17	55	74	2	5	17	1.11
336083--336229	28	5.0	28	69	21	79	73	2	5	18	1.15
336177--336233	16	3.4	16	76	23	64	80	1	1	15	0.87
336186--336241	26	2.1	27	80	12	62	78	3	3	14	1.02
336365--336401	2	18.5	2	100	0	74	51	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
344950--344999	23	2.2	22	89	3	73	2	6	10	82	0.92
344958--344999	22	1.9	22	90	0	66	2	4	7	85	0.80
346242--346310	34	2.0	35	94	2	122	47	5	31	14	1.68
354885--354969	31	2.7	32	77	1	91	28	29	29	12	1.94
356233--356285	27	2.0	27	88	0	79	20	11	20	47	1.81
356278--356366	44	2.0	44	100	0	178	38	16	13	31	1.88
356300--356368	21	3.2	21	62	22	52	40	15	11	31	1.84
357251--357284	18	1.9	18	88	5	52	38	5	11	44	1.65
357284--357314	14	2.2	14	94	0	53	32	9	32	25	1.88
362048--362109	27	2.3	27	86	5	81	41	24	16	17	1.89
362048--362109	13	4.6	13	84	6	79	41	24	16	17	1.89
364244--364281	11	3.5	11	82	7	51	36	0	0	63	0.95
364230--364281	21	2.6	21	87	6	72	36	0	0	63	0.95
364230--364290	19	3.4	17	82	17	70	34	0	1	63	1.04
364257--364360	49	2.2	47	81	6	127	37	3	5	52	1.43
364746--364788	17	2.5	18	88	11	72	27	0	2	69	1.00
364967--365020	22	2.3	24	81	15	69	35	3	1	59	1.26
365524--365678	59	2.6	60	83	4	188	36	12	16	34	1.86
365572--365663	30	3.1	29	66	10	78	33	10	17	38	1.85
365572--365711	60	2.3	59	85	4	181	33	11	20	35	1.88
366616--366642	14	1.9	14	100	0	54	77	22	0	0	0.76
371512--371546	15	2.3	15	95	0	61	42	25	11	20	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
373161--373608	182	2.5	181	87	4	631	27	13	13	45	1.80
373484--373940	112	4.1	112	90	3	669	26	14	12	46	1.80
374668--374750	17	4.8	17	82	7	96	36	8	24	31	1.85
375309--375392	33	2.6	33	90	5	127	40	36	10	11	1.77
375620--375645	5	5.2	5	100	0	52	23	57	19	0	1.40
376456--376502	21	2.2	21	96	0	85	34	25	8	31	1.86
383833--383892	30	2.0	30	90	6	95	43	18	6	31	1.76
384002--384041	21	1.9	21	94	0	71	50	7	10	32	1.64
386733--386778	8	6.2	8	76	19	55	26	15	36	21	1.93
386740--386858	21	5.7	21	93	1	204	28	17	33	20	1.95
386790--386851	13	5.5	13	66	33	54	29	17	33	19	1.95
386921--386978	21	2.8	21	94	0	98	25	17	34	22	1.96
387058--387115	30	2.0	29	83	10	73	44	13	5	36	1.66
387058--387117	29	2.0	30	87	6	86	43	13	6	36	1.70
387228--387267	21	1.9	21	89	0	62	52	7	7	32	1.58
389966--390025	30	2.0	30	90	6	95	43	18	6	31	1.76
390136--390175	21	1.9	21	94	0	71	50	7	10	32	1.64
391321--391368	19	2.5	20	82	3	62	29	12	6	52	1.63
392718--392742	8	3.1	8	100	0	50	24	12	36	28	1.91
406519--406562	2	22.0	2	100	0	88	50	0	0	50	1.00
407940--407977	3	12.7	3	83	10	51	60	2	0	36	1.11
407926--407978	24	2.2	24	86	6	72	60	3	0	35	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
407940--407977	14	2.8	14	84	4	51	60	2	0	36	1.11
408132--408239	43	2.6	41	82	4	128	28	17	30	23	1.97
408166--408527	131	2.7	131	81	6	383	26	17	30	25	1.97
408620--408771	63	2.4	61	84	4	187	42	15	13	28	1.84
410792--410822	16	1.9	16	93	0	53	0	12	38	48	1.42
410992--411026	17	2.1	17	88	0	52	68	8	11	11	1.39
413372--413536	30	5.6	30	72	11	115	55	9	13	21	1.66
413394--413505	59	1.9	59	83	3	145	54	9	11	24	1.66
413410--413535	59	2.1	59	82	2	146	57	9	11	22	1.62
413514--413581	29	2.3	30	82	7	86	57	11	10	20	1.63

Tables:   1   2   3