Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001989.1 Hibiscus syriacus cultivar Beakdansim tig00004063_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  499561

Tables:   1   2   3   

This is table  3  of  3  ( 278 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
414943--414991
3
17.0
3
80
16
50
63
4
0
32
1.13
415422--415673
137
1.8
136
80
4
301
27
17
27
27
1.98
415774--415924
61
2.4
64
81
10
188
42
13
12
31
1.81
418971--419005
13
2.7
13
95
0
61
34
8
34
22
1.85
421479--421521
22
2.0
21
86
4
59
58
9
2
30
1.42
421605--421792
30
6.3
31
75
11
144
59
7
13
20
1.58
421675--421715
21
1.9
22
90
5
66
60
4
14
19
1.51
421690--421814
59
2.1
59
78
7
139
57
5
11
25
1.55
422551--422598
20
2.4
20
82
6
53
6
16
12
64
1.46
427917--428267
66
5.4
64
71
19
182
30
14
15
39
1.87
427994--428267
66
4.1
64
74
14
191
31
15
14
37
1.88
428387--428627
40
5.8
38
71
17
142
24
36
17
21
1.94
428519--428627
40
2.8
40
90
1
175
23
39
15
21
1.91
428387--428756
173
2.1
172
84
3
467
24
33
17
24
1.96
428949--428979
13
2.4
13
94
0
53
35
0
0
64
0.94
440193--440240
3
17.3
3
79
12
50
27
0
2
70
0.98
441810--442916
134
8.3
132
82
6
1216
32
22
15
29
1.94
441810--442916
267
4.1
268
84
2
1404
32
22
15
29
1.94
441810--442892
401
2.7
398
84
4
1374
32
22
15
29
1.95
443955--443980
13
2.0
13
100
0
52
76
0
7
15
0.99
445105--445454
131
2.7
130
82
2
416
32
10
16
40
1.81
450814--450930
32
3.8
30
72
8
85
51
11
4
33
1.57
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
452964--453003
3
13.3
3
94
0
71
37
0
0
62
0.95
462380--462590
54
4.0
54
83
6
261
36
13
22
27
1.92
462950--463030
22
3.7
23
83
6
96
34
14
11
39
1.82
463658--464053
45
8.8
45
85
3
476
27
21
20
30
1.98
463658--464053
179
2.2
182
85
4
525
27
21
20
30
1.98
464105--464626
39
13.4
39
87
1
715
42
12
22
21
1.87
464797--464826
15
2.0
15
100
0
60
33
6
0
60
1.23
467721--467825
37
2.8
37
85
0
138
41
14
14
29
1.85
468164--468213
18
2.8
18
82
17
61
26
4
2
68
1.18
469429--469696
138
1.9
139
81
8
323
45
17
11
26
1.82
476171--476491
138
2.3
138
88
3
461
42
17
11
28
1.85
477735--477767
9
3.8
9
88
8
50
0
39
0
60
0.97
478524--478549
13
2.0
13
100
0
52
30
23
23
23
1.99
491983--492028
24
1.9
24
86
8
67
76
2
13
8
1.11
491990--492044
27
2.0
27
82
13
67
70
3
12
12
1.28
494967--495008
2
21.5
2
90
4
68
47
2
0
50
1.14

Tables:   1   2   3

The End!