genome.fa.s2070.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002070.1 Hibiscus syriacus cultivar Beakdansim tig00004227_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  812484

Tables:   1   2   3   4   

This is table  2  of  4  ( 382 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
292538--292812	153	1.8	151	84	4	383	46	7	5	41	1.55
292903--292934	3	10.7	3	93	0	55	62	3	0	34	1.11
292987--293064	29	2.6	30	75	13	81	65	3	3	26	1.27
294352--294406	3	19.0	3	88	7	87	65	0	0	34	0.93
294793--295599	118	6.8	116	78	9	840	26	18	16	39	1.91
294793--295599	240	3.4	240	93	0	1366	26	18	16	39	1.91
295799--295847	22	2.2	22	92	0	80	34	14	12	38	1.83
296150--296188	20	2.0	20	94	0	69	25	23	15	35	1.94
298643--298961	158	2.0	160	98	1	624	24	18	17	39	1.92
306799--306868	26	2.7	26	82	10	81	67	0	1	31	1.00
307727--307763	3	12.3	3	100	0	74	67	0	0	32	0.91
307730--307781	9	5.2	11	93	6	53	63	0	0	36	0.95
309079--309129	27	1.9	26	88	4	75	7	17	41	33	1.79
309180--309228	3	17.0	3	87	8	75	65	0	0	34	0.93
309180--309229	17	2.9	16	91	8	73	66	0	0	34	0.92
309531--309927	199	2.0	199	98	0	767	28	23	12	35	1.92
312434--313019	81	7.2	81	90	0	895	30	21	10	36	1.88
313511--313581	22	3.5	21	83	9	85	28	23	15	32	1.95
324310--324592	117	2.4	117	90	2	437	32	33	15	18	1.92
325533--325715	29	6.4	29	73	6	142	48	15	4	30	1.66
326799--327546	81	9.2	81	88	1	1077	31	21	12	35	1.90
328050--328101	22	2.5	22	87	6	72	28	26	13	30	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
329202--329266	22	3.1	21	82	10	80	47	0	0	52	1.00
329216--329262	19	2.5	20	82	10	62	46	0	0	53	1.00
329216--329259	13	3.7	13	71	22	51	47	0	0	52	1.00
329232--329262	16	1.9	16	100	0	62	45	0	0	54	0.99
335062--335148	35	2.5	34	80	12	97	55	9	8	27	1.60
335367--335400	12	2.8	12	86	0	50	5	26	26	41	1.78
337637--337794	51	3.1	49	74	11	133	25	27	29	17	1.97
346659--346808	78	1.9	78	85	5	205	30	32	13	24	1.93
350271--350324	20	2.7	21	88	5	76	25	20	27	25	1.99
350367--350411	22	2.0	23	91	4	74	26	13	28	31	1.94
350293--350477	95	1.9	96	82	3	230	32	16	22	28	1.95
350876--351216	45	7.6	44	86	6	384	38	11	21	28	1.88
350876--351191	135	2.3	135	85	7	437	38	11	21	28	1.88
357764--358135	45	8.4	45	81	9	385	36	12	22	29	1.90
357930--358089	81	2.0	81	91	0	257	34	13	22	30	1.92
358987--359032	20	2.3	20	92	3	76	26	23	15	34	1.94
360360--360395	18	1.9	19	88	5	56	19	5	16	58	1.58
362010--362068	31	1.9	31	96	0	109	32	22	3	42	1.70
362010--362076	31	2.3	28	85	10	82	31	19	4	44	1.70
362347--362388	17	2.4	17	84	4	57	47	2	0	50	1.14
364941--364975	3	11.7	3	93	0	61	65	0	2	31	1.07
365131--365806	134	5.1	134	82	3	747	28	15	24	31	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
365150--365806	267	2.5	268	80	6	787	28	16	24	31	1.96
367524--367553	1	30.0	1	93	0	51	0	3	0	96	0.21
369232--369264	16	2.0	17	94	5	59	36	18	27	18	1.94
369543--369588	18	2.6	18	100	0	92	17	10	30	41	1.84
370319--370426	22	4.9	23	76	5	80	17	21	24	37	1.94
371709--371743	18	1.9	18	94	0	61	34	2	8	54	1.46
372064--372124	24	2.5	24	94	0	104	60	19	0	19	1.36
373609--373652	20	2.1	22	83	8	56	63	13	0	22	1.29
377938--377977	21	1.9	21	85	10	55	35	7	2	55	1.42
379903--380057	65	2.4	63	82	6	170	32	18	20	29	1.96
379924--380057	63	2.1	65	87	5	193	32	17	21	28	1.96
381652--381684	10	3.4	10	87	8	50	57	3	21	18	1.53
384331--384370	21	1.9	21	85	10	55	35	10	7	47	1.65
388940--388979	13	3.0	13	81	3	53	62	0	25	12	1.30
395216--395255	21	1.9	21	85	10	55	35	10	7	47	1.65
400144--400194	23	2.2	23	86	6	68	29	17	21	31	1.96
404980--405135	3	53.7	3	78	8	162	59	0	6	33	1.23
406653--406929	45	6.2	45	86	4	337	29	20	10	39	1.86
406675--406929	89	2.8	90	86	3	354	29	21	10	39	1.86
406675--406929	134	1.9	135	86	2	370	29	21	10	39	1.86
407423--407495	18	3.7	20	76	20	73	24	26	16	32	1.96
407432--407476	22	2.0	23	91	4	74	26	24	15	33	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
407513--407591	41	1.9	40	82	10	97	29	24	12	34	1.92
407544--407591	19	2.3	20	79	13	53	31	25	12	31	1.92
413027--413069	21	2.0	22	86	4	61	39	13	4	41	1.66
413704--413919	45	4.8	45	84	3	276	30	19	9	41	1.83
414448--414504	22	2.7	21	82	12	71	22	28	19	29	1.98
416399--416456	29	1.9	31	82	6	75	55	8	18	17	1.67
418432--418872	54	8.3	54	84	3	538	26	18	19	35	1.95
418724--418809	27	3.2	27	66	12	68	25	15	19	39	1.91
420334--420369	15	2.4	15	90	0	54	50	13	8	27	1.71
420727--420756	11	2.7	11	89	0	51	76	6	0	16	0.99
420719--420761	16	2.6	17	81	3	52	74	9	0	16	1.06
424826--424873	23	2.1	23	84	0	60	58	2	0	39	1.10
427861--427917	29	1.9	29	92	3	96	45	3	0	50	1.18
428148--428192	22	2.1	21	83	4	54	57	13	0	28	1.36
431964--432034	29	2.4	30	70	11	74	32	16	5	45	1.71
433514--433555	20	2.1	20	90	0	66	28	14	23	33	1.94
433584--433628	20	2.2	20	88	0	72	24	15	24	35	1.94
433514--433776	77	3.4	77	95	0	463	28	13	20	37	1.91
433663--433700	20	1.9	20	94	0	67	28	13	21	36	1.91
433739--433776	20	1.9	20	94	0	67	31	10	21	36	1.87
434060--434108	22	2.2	22	100	0	98	28	16	24	30	1.96
435281--435322	20	2.1	20	90	0	66	28	14	23	33	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
435351--435399	20	2.5	20	82	0	71	26	16	24	32	1.96
435281--435551	77	3.5	77	91	2	402	26	16	21	35	1.94
435428--435476	20	2.5	20	93	0	89	26	16	26	30	1.97
435507--435615	20	5.3	20	74	4	65	22	14	22	39	1.91
446739--446787	21	2.4	20	82	3	53	40	20	2	36	1.64
451851--451890	19	2.2	18	86	4	53	62	12	5	20	1.48
453150--453390	21	11.6	21	81	6	276	31	23	21	24	1.98
453150--453390	104	2.3	104	89	1	376	31	23	21	24	1.98
453166--453416	83	3.0	83	86	5	323	32	21	21	24	1.98
453399--453533	21	6.6	21	73	14	102	22	20	23	32	1.98
453150--453451	104	2.9	104	86	4	362	30	22	22	24	1.99
453374--453493	62	1.9	62	81	9	147	26	20	23	30	1.98
453166--453451	83	3.4	83	84	6	289	30	22	22	25	1.99
453425--453558	42	3.3	40	83	7	146	23	20	20	35	1.96
454162--454205	6	7.5	6	89	2	63	0	13	54	31	1.39
454291--454477	21	8.9	20	73	17	150	35	23	19	20	1.96
454294--454471	42	4.3	42	94	0	313	36	24	19	20	1.95
454294--454496	84	2.4	83	91	4	329	36	23	19	20	1.95
459724--459753	15	1.9	15	93	6	51	13	0	6	80	0.91
468391--468447	25	2.3	24	80	14	64	52	3	1	42	1.28
468875--469125	123	2.0	123	99	0	493	31	17	13	38	1.88
477535--477574	19	2.2	18	86	4	53	62	7	5	25	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
479102--479142	17	2.4	18	80	12	50	58	2	4	34	1.32
479390--479462	3	24.3	3	97	0	137	65	0	32	1	1.01
480145--480218	27	2.7	27	79	6	69	56	18	1	22	1.49
482629--482673	20	2.2	20	88	0	63	48	4	17	28	1.66
482638--482681	20	2.2	20	83	0	52	52	9	13	25	1.70
483821--483861	17	2.6	15	88	7	55	63	0	0	36	0.95
485534--485605	2	40.0	2	75	20	70	45	0	1	52	1.09
486095--486132	20	1.9	20	89	10	60	60	13	23	2	1.45
488234--488376	47	3.3	45	81	11	165	30	21	7	40	1.81
491645--491702	22	2.8	21	72	12	57	41	3	5	50	1.42

Tables:   1   2   3   4