genome.fa.s2070.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002070.1 Hibiscus syriacus cultivar Beakdansim tig00004227_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  812484

Tables:   1   2   3   4   

This is table  4  of  4  ( 382 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
784498--784630	36	3.6	38	83	6	157	37	13	18	30	1.90
784498--784630	39	3.6	36	81	7	144	37	13	18	30	1.90
791828--791858	3	10.3	3	100	0	62	67	0	0	32	0.91
792575--792704	42	3.1	41	76	17	142	35	17	17	29	1.93
792544--792702	82	1.9	83	87	3	232	35	17	19	27	1.94
792542--792683	42	3.5	40	76	14	146	37	18	19	25	1.94
792542--792704	42	3.9	41	75	16	140	36	17	19	26	1.94
792544--792729	82	2.2	80	81	9	221	37	18	18	26	1.93
792718--792830	41	2.7	43	81	6	126	34	13	17	34	1.89
794927--795006	42	1.9	42	85	10	110	20	16	21	42	1.89
802464--802551	21	4.2	21	82	5	106	43	19	35	2	1.64
802473--802552	42	1.9	42	89	0	124	45	18	33	2	1.63
802473--802566	42	2.3	40	77	12	100	44	19	31	4	1.70
802955--803119	43	3.9	43	80	3	190	36	23	16	23	1.94
803101--803161	31	2.0	31	83	6	79	29	22	14	32	1.94
803132--803284	43	3.6	43	81	3	175	35	24	11	28	1.91
803134--803292	86	1.8	85	85	5	221	34	23	11	30	1.90
804954--805110	32	4.8	32	80	8	156	30	15	4	49	1.65
809828--809895	25	2.8	24	71	8	64	60	2	7	29	1.39
810860--810885	9	2.9	9	100	0	52	0	30	0	69	0.89
810819--810917	46	2.1	47	83	9	123	6	23	0	70	1.09
810829--810923	15	6.5	14	70	18	52	5	23	0	71	1.06

Tables:   1   2   3   4

The End!