Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002346.1 Hibiscus syriacus cultivar Beakdansim tig00004788_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  176006

Tables:   1   2   

This is table  2  of  2  ( 140 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
146208--146283
21
3.7
21
82
3
100
10
26
17
46
1.80
146363--146433
33
2.2
33
89
0
106
47
16
23
11
1.79
146615--146669
22
2.5
22
84
0
83
20
14
40
25
1.90
146815--146988
20
8.6
20
82
5
208
19
18
26
35
1.95
146817--146988
60
2.8
60
83
0
236
19
18
26
35
1.95
146975--147057
21
4.0
21
73
6
78
25
16
24
33
1.96
159110--159142
10
3.3
10
100
0
66
81
9
0
9
0.87
163210--163278
2
34.5
2
100
0
138
50
0
0
49
1.00
163993--165059
355
3.0
355
98
0
2041
23
23
18
34
1.96
169664--169712
20
2.4
20
86
3
62
16
24
16
42
1.87
169658--169712
21
2.7
21
80
2
67
18
25
16
40
1.91
169739--169830
20
4.6
20
85
5
114
36
19
20
22
1.95
170332--170379
19
2.5
19
77
12
53
45
27
16
10
1.80
170375--170520
19
8.1
19
70
16
96
13
21
21
43
1.87
170397--170495
33
3.0
33
93
1
162
12
23
23
41
1.87
170581--170635
25
2.2
26
78
15
62
20
7
18
54
1.66
172606--172647
18
2.3
18
95
0
75
23
28
23
23
2.00
174054--174089
14
2.6
14
95
0
63
30
0
25
44
1.54
174210--174249
17
2.3
18
91
4
64
50
25
15
10
1.74
174246--174344
33
3.0
33
84
8
130
15
21
20
43
1.88

Tables:   1   2

The End!