genome.fa.s2660.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002660.1 Hibiscus syriacus cultivar Beakdansim tig00005459_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2211860

Tables:   1   2   3   4   5   6   7   8   9   

This is table  3  of  9  ( 1072 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
617682--617720	19	2.0	20	85	5	53	35	20	5	38	1.75
618289--618376	32	2.6	33	78	7	97	12	7	32	46	1.71
621928--621967	2	20.5	2	94	5	73	50	0	0	50	1.00
622287--622316	2	15.5	2	93	6	53	46	0	0	53	1.00
624495--624540	4	11.8	4	77	13	51	23	4	2	69	1.17
629975--630030	29	1.9	29	100	0	112	32	10	12	44	1.77
630349--630453	53	2.0	52	92	1	174	42	11	22	22	1.85
631709--631991	141	2.0	142	99	0	559	42	24	13	20	1.88
636371--636399	2	14.5	2	100	0	58	48	0	0	51	1.00
640558--640602	16	2.6	17	79	10	56	48	4	0	46	1.22
640905--640991	39	2.3	35	76	17	93	58	9	5	26	1.51
644269--644299	16	1.9	16	100	0	62	29	6	0	64	1.18
656699--656724	6	4.3	6	100	0	52	19	46	0	34	1.50
661095--661552	228	2.0	229	99	0	900	39	16	15	28	1.89
663851--663959	54	2.0	53	98	1	209	39	18	17	24	1.92
666786--666976	39	4.9	39	89	2	294	27	26	13	32	1.93
667327--667432	53	2.0	53	100	0	212	43	18	11	26	1.84
669072--669554	242	2.0	243	94	1	842	42	16	18	22	1.89
670733--670775	22	2.0	21	90	4	68	32	23	11	32	1.90
677331--677378	22	2.2	22	92	3	80	31	12	18	37	1.88
681402--681440	8	4.9	8	93	0	69	0	15	74	10	1.07
682587--682636	24	2.1	24	92	0	82	42	6	14	38	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
682914--682985	22	3.4	22	73	11	87	18	19	25	37	1.94
682935--683003	19	3.5	19	73	11	66	18	18	21	40	1.91
682914--683003	41	2.2	41	97	0	171	18	18	23	38	1.93
683097--683146	6	8.7	6	86	8	77	32	48	20	0	1.50
683097--683154	28	2.1	28	100	0	116	32	44	22	0	1.53
683635--683671	6	6.5	6	96	3	60	0	16	54	29	1.43
683795--683887	20	4.6	20	78	2	105	43	23	20	12	1.86
683835--683908	21	3.6	21	70	3	78	35	27	18	18	1.95
683819--683912	41	2.3	41	94	0	161	39	24	19	17	1.92
684284--684327	16	2.8	16	85	0	61	31	18	20	29	1.96
684577--684612	10	3.4	10	92	7	54	77	0	8	13	0.98
685676--685780	32	3.2	33	74	5	88	31	11	9	47	1.72
694480--694530	15	3.4	15	83	5	68	43	5	11	39	1.66
694475--694546	30	2.4	29	88	6	110	45	6	13	33	1.71
694529--694598	20	3.5	20	94	0	122	41	10	12	35	1.77
694762--694861	29	3.5	29	75	19	86	50	2	1	47	1.19
694774--694862	27	3.3	27	76	10	76	50	2	0	47	1.13
694857--694922	30	2.2	30	86	8	89	50	0	1	48	1.10
694867--694927	29	2.1	28	87	6	86	47	0	0	52	1.00
694875--694946	29	2.4	30	86	6	94	51	0	0	48	1.00
695121--695240	42	2.8	42	88	1	177	49	17	15	17	1.80
696437--696465	12	2.4	12	100	0	58	0	6	0	93	0.36
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
700714--700940	122	1.9	123	85	2	323	43	7	17	31	1.77
706835--706883	19	2.8	16	77	19	53	6	28	0	65	1.16
706840--706888	19	2.6	18	83	6	53	8	28	0	63	1.23
706840--706888	20	2.5	19	86	3	71	8	28	0	63	1.23
715715--715749	14	2.5	14	100	0	70	28	28	22	20	1.98
715743--715776	18	1.9	18	94	5	61	26	32	29	11	1.92
727455--727500	24	2.0	24	83	8	60	43	4	0	52	1.21
727488--727512	13	1.9	13	100	0	50	32	8	0	60	1.26
727511--727541	15	2.1	15	93	0	53	61	0	0	38	0.96
730588--730612	12	2.1	12	100	0	50	44	16	0	40	1.47
732395--732424	2	15.0	2	100	0	60	50	0	0	50	1.00
739551--739576	2	13.0	2	100	0	52	50	0	0	50	1.00
742679--742713	12	2.9	12	86	0	52	45	5	34	14	1.68
742677--742718	18	2.3	18	91	0	66	42	4	33	19	1.72
743138--743171	16	2.1	16	88	0	50	67	2	0	29	1.05
744072--744229	21	7.8	20	70	7	77	37	24	17	19	1.93
744197--744587	20	19.5	20	83	6	450	35	25	18	20	1.95
745264--745310	24	2.0	24	87	8	69	25	14	21	38	1.92
745485--745509	12	2.1	12	100	0	50	72	0	28	0	0.86
747791--748163	19	21.4	19	77	20	406	46	17	21	13	1.83
747791--748185	33	11.5	33	81	14	357	46	17	21	14	1.84
747852--748144	109	2.8	102	79	15	234	46	17	22	13	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
747819--748185	52	7.0	52	84	11	484	46	17	22	14	1.83
748196--748283	14	5.6	14	71	23	68	11	23	19	45	1.83
748192--748301	33	3.3	33	100	0	220	12	24	19	43	1.85
748210--748301	19	5.4	19	71	24	96	13	22	18	45	1.84
748178--748301	66	1.9	66	89	3	196	16	22	18	41	1.90
748192--748301	16	6.6	17	68	26	76	12	24	19	43	1.85
748407--748442	14	2.6	14	86	4	56	47	22	0	30	1.52
750333--750467	19	7.6	19	75	16	101	45	25	18	10	1.81
750389--750445	14	3.7	14	72	20	51	45	26	19	8	1.79
750370--750462	33	2.8	33	88	0	150	47	23	19	9	1.79
750333--750467	52	2.5	54	77	18	149	45	25	18	10	1.81
750463--750591	19	7.3	19	75	17	125	8	17	28	45	1.77
750463--750554	33	2.8	33	93	3	150	7	18	28	45	1.76
750635--751013	92	4.1	93	98	0	735	46	18	12	22	1.83
750635--751013	185	2.0	185	98	1	733	46	18	12	22	1.83
752718--752840	14	7.7	14	72	24	93	43	22	25	8	1.82
752710--752857	33	4.5	33	96	0	278	45	20	24	9	1.81
752717--752862	19	8.8	18	71	24	108	43	21	24	9	1.82
752874--752928	14	3.6	14	73	21	56	9	25	23	41	1.83
752858--752928	33	2.2	33	94	0	124	8	22	25	43	1.81
752869--752950	33	2.5	33	89	2	119	9	25	21	42	1.84
752881--752969	20	4.8	20	72	19	75	12	24	19	43	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
753049--753119	33	2.2	33	92	0	115	47	16	22	12	1.80
753301--753355	22	2.5	22	81	0	74	20	16	40	23	1.91
753501--753694	20	9.6	20	81	6	212	19	19	25	35	1.95
753501--753694	61	3.2	60	81	5	237	19	19	25	35	1.95
753500--753694	81	2.4	81	83	3	241	18	19	25	35	1.95
755376--755431	28	2.0	27	83	10	69	57	0	0	42	0.99
756720--756760	14	2.9	14	85	0	55	29	0	24	46	1.53
757082--757118	16	2.2	18	85	9	51	62	0	0	37	0.96
758038--758089	24	2.2	25	83	13	65	17	5	3	73	1.19
758766--758790	2	12.5	2	100	0	50	52	0	0	48	1.00
760863--760932	35	2.0	35	88	0	104	30	17	17	35	1.92
763155--763218	12	5.4	12	79	3	58	14	12	45	28	1.81
763155--763198	12	3.8	12	90	3	63	11	9	47	31	1.71
763153--763218	23	2.8	24	81	9	82	13	13	45	27	1.81
763273--763312	2	20.5	2	94	5	73	50	0	0	50	1.00
772636--772769	66	2.0	67	91	4	218	41	15	17	25	1.89
777993--778056	21	3.0	21	86	4	92	26	23	23	26	2.00
779349--779509	64	2.5	63	84	8	191	27	22	17	32	1.96
789131--789256	64	2.0	65	98	1	245	24	14	20	40	1.90
801484--801626	69	2.0	71	94	4	254	33	20	10	35	1.87
810170--810280	25	4.5	25	68	15	88	55	1	3	38	1.28
810170--810302	25	5.4	23	68	20	74	55	2	3	38	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
810430--810483	20	2.7	19	75	8	63	33	31	18	16	1.93
810470--810809	20	16.8	20	67	19	82	37	23	18	20	1.94
810533--810807	20	13.6	20	77	9	229	38	24	18	18	1.93
810533--810808	40	6.8	40	80	8	258	38	24	18	18	1.93
811266--811343	20	3.8	19	81	6	84	52	19	16	11	1.74
811281--811341	21	3.0	21	78	7	63	50	19	18	11	1.76
811350--811462	20	6.1	19	78	13	110	13	23	18	44	1.85
812514--812558	21	2.1	21	87	0	63	31	28	24	15	1.96
813310--813405	32	3.0	32	79	14	126	29	17	18	34	1.94
813397--813519	30	4.1	30	95	1	212	21	21	26	30	1.98

Tables:   1   2   3   4   5   6   7   8   9