genome.fa.s2663.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002663.1 Hibiscus syriacus cultivar Beakdansim tig00005465_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  975815

Tables:   1   2   3   4   

This is table  3  of  4  ( 463 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
567881--567964	38	2.2	38	77	8	91	35	7	9	47	1.64
582273--582311	18	2.1	19	85	4	53	46	2	0	51	1.14
582285--582323	19	2.0	20	85	5	53	53	0	0	46	1.00
584294--584323	3	10.0	3	100	0	60	0	66	0	33	0.92
587042--587072	2	15.5	2	93	0	53	48	3	0	48	1.17
591340--591403	23	2.8	23	82	0	83	26	25	26	21	2.00
598573--598611	20	2.0	20	85	9	55	66	7	0	25	1.18
598976--599075	50	2.0	51	84	5	132	51	9	3	37	1.49
598984--599087	50	2.1	50	80	7	113	53	7	1	36	1.41
609822--609869	23	2.1	23	96	0	87	52	22	4	20	1.64
624002--624210	76	2.8	77	84	3	264	25	31	22	20	1.98
630021--630060	21	1.9	21	89	0	62	25	40	25	10	1.86
630423--630474	21	2.5	21	81	3	70	50	5	3	40	1.45
632269--632335	30	2.2	31	94	5	118	43	2	14	38	1.61
632639--632853	76	2.8	77	86	2	283	25	32	22	19	1.97
636055--636111	20	2.8	20	94	0	96	36	17	14	31	1.89
640042--640089	24	2.0	24	100	0	96	45	12	4	37	1.61
642286--642369	39	2.2	38	89	2	123	34	2	13	50	1.54
644963--645243	94	3.0	94	90	3	426	37	14	14	34	1.87
645333--645390	29	2.0	29	100	0	116	51	17	6	24	1.69
647741--648472	363	2.0	363	98	0	1419	29	22	19	28	1.98
649860--649953	24	4.0	24	75	5	84	14	13	18	53	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
649897--649958	24	2.6	24	86	0	88	12	12	14	59	1.61
650067--650145	38	2.1	38	100	0	158	56	5	5	32	1.43
650199--650271	31	2.4	31	76	19	75	42	8	5	43	1.57
650296--650320	6	4.2	6	100	0	50	68	0	0	32	0.90
653921--653967	24	2.0	24	83	8	60	29	31	17	21	1.96
655382--655406	11	2.3	11	100	0	50	32	8	24	36	1.84
655653--656145	230	2.1	230	94	1	875	44	8	8	39	1.65
656194--656240	20	2.4	19	89	10	76	55	10	17	17	1.69
656366--656418	20	2.7	20	82	5	54	52	9	15	22	1.70
658639--658682	21	2.1	21	91	0	70	40	11	31	15	1.83
658716--658781	33	2.0	33	90	0	105	28	0	48	22	1.51
660572--660620	19	2.6	19	93	0	80	30	2	10	57	1.43
660739--662031	199	6.5	199	98	0	2471	36	15	17	30	1.91
662309--662345	18	2.1	18	89	0	56	32	5	10	51	1.60
662301--662347	24	2.0	24	86	0	67	34	4	14	46	1.64
662604--662690	39	2.2	39	95	0	156	48	20	13	17	1.81
663094--663166	23	3.2	23	88	0	101	34	4	21	39	1.73
666562--666602	16	2.6	16	81	11	50	56	0	4	39	1.21
666749--666848	3	33.0	3	81	13	116	67	1	2	30	1.09
666807--666870	12	5.5	11	90	7	65	65	1	1	31	1.11
668218--668261	3	16.0	3	82	17	51	68	2	0	29	1.02
668218--668264	16	3.0	15	81	3	58	68	2	0	29	1.02
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
668228--668271	23	2.0	23	91	8	74	72	4	0	22	1.02
672458--672493	16	2.1	18	90	10	58	38	2	0	58	1.13
672546--672570	11	2.3	11	100	0	50	60	0	0	40	0.97
672613--672665	5	10.6	5	79	0	61	39	5	0	54	1.24
672762--672812	20	2.5	20	93	0	84	39	11	0	49	1.40
672764--672812	10	4.9	10	79	0	62	38	12	0	48	1.41
673055--673101	18	2.5	19	82	10	60	51	0	4	44	1.21
675704--676300	300	2.0	299	98	0	1149	28	15	15	39	1.88
697324--697348	2	12.5	2	100	0	50	52	0	0	48	1.00
699365--699423	29	2.0	29	100	0	118	23	13	13	49	1.78
704050--704108	29	2.0	29	100	0	118	23	13	13	49	1.78
707021--707049	14	2.1	14	100	0	58	51	0	13	34	1.42
707876--707900	12	2.1	12	100	0	50	36	0	24	40	1.55
708596--708634	17	2.4	16	91	4	60	25	0	23	51	1.49
712713--712800	21	4.4	19	76	13	79	48	0	3	47	1.18
712737--712797	20	3.1	19	76	21	63	47	0	3	49	1.18
722378--722407	14	2.1	14	93	0	51	33	0	3	63	1.11
726885--726932	23	2.1	23	84	7	62	27	6	0	66	1.15
727080--727121	19	2.2	20	86	4	59	11	11	0	76	1.03
727235--727287	21	2.5	20	76	11	52	13	9	1	75	1.12
727251--727294	16	2.6	17	85	7	54	11	11	0	77	1.00
727251--727301	17	3.0	17	86	11	61	13	11	0	74	1.07
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
727254--727301	18	2.7	18	87	6	62	12	12	0	75	1.06
731251--731513	95	2.7	95	84	5	323	33	15	17	32	1.92
732606--732977	121	3.1	121	86	2	550	32	26	18	22	1.97
732627--733013	120	3.2	118	82	6	481	32	25	18	23	1.97
733018--733415	84	4.7	84	79	5	374	35	22	18	23	1.96
735676--735705	15	2.0	15	93	0	51	13	10	0	76	1.01
736087--736210	24	5.3	25	68	19	97	69	5	3	21	1.24
736082--736210	47	2.8	45	85	6	163	68	6	3	21	1.25
737070--737170	44	2.3	44	77	5	105	33	19	21	24	1.97
737927--738054	31	4.1	31	78	6	132	26	16	21	35	1.94
737982--738079	31	3.2	31	81	4	83	24	18	24	32	1.97
739169--739225	21	2.7	21	86	0	69	33	12	26	28	1.92
747866--747938	34	2.1	34	89	0	110	27	12	21	38	1.89
749047--749122	38	1.9	40	86	7	111	23	17	21	38	1.93
753539--753615	38	2.0	38	97	0	145	20	16	15	46	1.84
753553--753619	19	3.5	19	66	24	50	23	14	14	46	1.83
759505--759569	18	3.6	18	69	19	62	41	6	3	49	1.43
759541--759576	18	2.0	18	88	0	54	36	8	2	52	1.46
760694--760733	19	2.1	19	100	0	80	20	15	30	35	1.93
765569--765616	24	2.0	24	95	0	87	52	12	18	16	1.75
770867--770911	24	1.9	24	86	4	65	6	26	15	51	1.68
770842--771256	205	2.0	205	91	0	677	18	17	19	45	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
777117--777166	21	2.6	18	79	17	55	46	12	0	42	1.41
778950--778974	2	12.5	2	100	0	50	48	0	0	52	1.00
779810--779879	31	2.3	30	82	4	88	41	11	10	37	1.75
779810--779910	28	3.4	29	80	9	98	41	11	8	37	1.73
780001--780040	20	2.0	20	90	0	62	32	22	12	32	1.91
780021--780089	31	2.4	28	85	7	84	39	15	10	34	1.82
780029--780089	28	2.1	31	84	9	83	40	14	8	36	1.76
780759--780797	14	2.5	17	76	23	50	46	0	0	53	1.00
785123--785159	6	6.2	6	100	0	74	35	48	16	0	1.46
785157--785235	5	15.8	5	89	0	86	16	34	40	8	1.80
791097--791122	6	4.3	6	100	0	52	34	50	15	0	1.45
794144--794185	17	2.4	18	88	7	61	0	33	0	66	0.92
794147--794184	9	4.2	9	80	12	51	0	34	0	65	0.93
800680--800751	35	2.1	35	94	5	128	30	13	23	31	1.94
804194--804231	15	2.5	15	91	0	58	7	34	13	44	1.72
804186--804232	18	2.6	18	86	0	58	8	34	14	42	1.77
805220--805349	31	4.2	31	82	7	140	47	8	2	41	1.46
812546--812663	60	2.0	59	84	1	155	33	10	6	50	1.63
817153--817189	17	2.2	17	90	0	56	29	24	29	16	1.96
824654--824788	20	6.7	19	75	9	90	35	22	17	24	1.95
824652--824782	61	2.1	61	82	0	154	37	22	16	23	1.93
824956--824999	22	2.0	22	90	0	70	20	43	15	20	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
825457--825511	25	2.2	24	78	15	58	20	9	18	52	1.71
826623--826667	18	2.5	18	88	0	72	26	44	15	13	1.83
827064--827092	12	2.3	13	94	5	51	0	3	17	79	0.87
827149--827194	20	2.3	20	84	0	56	36	23	21	17	1.94
827160--827215	20	2.8	20	81	2	69	39	21	23	16	1.92
827188--827251	19	3.7	18	76	20	73	45	20	20	14	1.85
827288--827343	20	2.8	19	84	7	67	19	25	19	35	1.95
829382--829449	19	3.6	19	97	0	127	48	16	19	16	1.81
829484--829558	20	3.8	20	68	7	62	18	20	20	41	1.91
830673--830708	3	12.0	3	87	0	54	72	0	27	0	0.85

Tables:   1   2   3   4