genome.fa.s2663.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002663.1 Hibiscus syriacus cultivar Beakdansim tig00005465_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  975815

Tables:   1   2   3   4   

This is table  4  of  4  ( 463 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
830673--830705	12	2.8	12	100	0	66	72	0	27	0	0.85
833022--833076	14	3.6	14	73	21	56	45	20	23	10	1.82
833004--833161	33	4.8	33	92	3	264	43	18	23	14	1.87
833182--833223	19	2.2	19	86	0	57	16	19	21	42	1.89
833191--833257	19	3.8	19	75	18	63	13	22	17	46	1.83
834744--834810	21	3.2	21	68	4	55	19	20	35	23	1.95
834744--834866	42	2.9	41	79	7	113	22	18	36	21	1.95
835084--835268	91	2.0	90	90	6	291	47	18	12	22	1.82
836925--836984	20	3.0	20	82	4	77	46	18	20	15	1.84
836973--837028	14	3.6	14	74	21	58	39	25	25	10	1.87
836952--837045	33	2.8	33	95	1	161	42	23	22	11	1.86
837046--837092	19	2.5	19	92	0	76	8	14	25	51	1.71
837611--837664	20	2.7	19	85	5	63	20	18	24	37	1.94
837611--837676	20	3.2	20	78	6	62	22	19	21	36	1.95
837802--837842	21	2.0	21	85	0	55	34	29	17	19	1.94
839975--840019	22	2.0	22	100	0	90	48	8	4	37	1.55
843889--843977	31	2.8	31	84	5	108	16	15	11	56	1.67
852116--852170	3	18.3	3	88	0	83	38	0	1	60	1.08
854357--854394	18	2.1	19	90	5	60	31	0	0	68	0.90
856729--856844	60	1.9	60	82	3	144	23	21	26	28	1.99
859916--860033	56	2.1	55	96	3	218	38	6	14	40	1.72
862938--862967	16	1.9	16	93	6	53	53	0	6	40	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
864160--864209	2	25.5	2	95	4	93	52	0	0	48	1.00
864377--864421	3	15.0	3	100	0	90	66	0	0	33	0.92
865185--865223	17	2.4	17	95	4	71	51	5	0	43	1.24
871182--871221	21	2.0	21	85	9	57	22	7	22	47	1.76
872208--872257	24	2.1	24	100	0	100	44	24	4	28	1.72
878474--878569	45	2.2	44	83	9	117	51	3	1	44	1.24
878660--878770	31	3.7	31	76	20	119	37	18	22	21	1.94
878660--878772	59	2.0	55	86	6	154	38	17	22	22	1.94
880288--880322	2	17.5	2	100	0	70	48	0	0	51	1.00
881966--882009	21	2.1	21	91	0	70	34	15	6	43	1.74
882216--882255	8	5.4	8	77	17	50	17	0	0	82	0.67
882223--882247	13	1.9	13	100	0	50	20	0	0	80	0.72
882216--882259	21	2.1	21	100	0	88	20	0	0	79	0.73
882565--882631	15	4.8	13	75	17	64	49	0	1	49	1.10
882956--883019	31	2.1	31	96	0	119	26	14	15	43	1.85
883190--883259	31	2.4	29	77	11	81	45	20	4	30	1.70
883190--883263	29	2.5	30	75	16	84	44	18	4	32	1.69
884181--884235	27	2.0	27	86	6	76	34	3	0	61	1.13
887719--887763	2	23.0	2	95	4	83	48	0	0	51	1.00
888680--888704	2	12.5	2	100	0	50	48	0	0	52	1.00
894112--894150	17	2.4	17	91	4	62	51	5	2	41	1.38
895287--895339	14	3.7	14	89	2	79	37	0	1	60	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
895303--895337	11	3.2	11	92	8	54	37	0	0	62	0.95
895262--895350	14	7.0	13	71	17	71	43	0	1	55	1.07
895266--895339	3	25.3	3	75	5	71	41	0	1	56	1.07
895768--895792	13	1.9	13	100	0	50	88	8	4	0	0.64
896029--896057	13	2.2	13	100	0	58	0	31	62	6	1.22
896604--896641	19	2.1	19	95	5	69	18	5	5	71	1.25
901177--901221	4	11.2	4	90	9	74	75	0	0	24	0.80
904435--904701	83	3.2	83	92	1	428	29	13	20	35	1.92
907307--907361	22	2.5	22	87	0	83	34	14	14	36	1.87
908022--909192	76	15.4	76	96	0	2119	21	21	21	35	1.96
909367--909419	14	3.7	14	89	2	79	37	0	1	60	1.08
909383--909417	11	3.2	11	92	8	54	37	0	0	62	0.95
909342--909430	14	7.0	13	71	17	71	43	0	1	55	1.07
909346--909419	3	25.3	3	75	5	71	41	0	1	56	1.07
910126--910154	13	2.2	13	100	0	58	0	31	62	6	1.22
910707--910744	19	2.1	19	95	5	69	18	5	5	71	1.25
910839--910877	13	3.0	13	82	10	53	38	0	2	58	1.12
915174--915201	2	14.0	2	100	0	56	50	0	0	50	1.00
922420--922463	9	4.9	9	80	0	52	9	34	22	34	1.86
922427--922466	21	1.9	21	94	0	71	10	37	22	30	1.87
924318--924539	111	2.0	111	94	0	390	44	10	8	36	1.69
924603--924641	18	2.2	18	90	4	62	64	2	2	30	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
924684--924713	10	3.0	10	95	0	51	36	0	30	33	1.58
924923--924985	29	2.1	29	82	2	72	28	14	28	28	1.95
933580--933664	2	43.0	2	97	2	163	49	0	0	50	1.00
941583--941648	2	33.0	2	100	0	132	50	0	0	50	1.00
942788--942830	22	2.0	21	82	13	52	30	0	20	48	1.50
943354--943385	16	2.0	16	93	0	55	37	3	15	43	1.63
946564--946798	20	11.6	20	74	8	181	38	24	18	18	1.93
946564--946795	40	5.8	40	80	7	218	38	24	18	18	1.93
946564--946795	121	1.9	121	83	3	297	38	24	18	18	1.93
947359--947430	20	3.6	19	77	5	72	52	20	13	12	1.73
947374--947437	21	3.1	21	79	2	67	53	18	17	10	1.72
947359--947480	19	6.5	19	70	15	74	50	22	17	10	1.76
947481--947602	33	3.5	33	81	8	136	12	22	18	46	1.82
947539--947602	20	3.1	21	80	8	69	10	23	17	48	1.78
949618--949687	21	3.3	21	66	5	61	25	35	18	20	1.95
949569--949687	42	2.8	42	82	5	116	24	36	16	22	1.94
951040--951075	14	2.6	14	95	0	63	33	0	22	44	1.53
951230--951256	14	1.9	14	100	0	54	48	22	14	14	1.81
951182--951254	33	2.2	33	85	0	101	47	17	17	16	1.82
951267--951404	19	7.7	19	71	16	125	13	23	18	44	1.86
951348--951444	20	5.3	19	73	15	78	17	21	20	40	1.92
951271--951444	72	2.5	71	85	7	223	15	22	19	41	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
951271--951417	33	4.3	33	85	10	213	13	23	19	43	1.86
951410--951483	20	3.7	20	66	16	53	25	17	24	32	1.97
953177--953209	16	2.1	16	100	0	66	24	27	30	18	1.98
953972--954025	24	2.2	24	93	0	90	40	16	18	24	1.90
954885--955175	20	14.5	20	80	7	268	19	18	23	38	1.93
955225--955278	20	2.7	19	75	8	63	16	18	31	33	1.93
955407--955435	2	14.5	2	100	0	58	51	0	0	48	1.00
955790--955853	31	2.1	31	90	0	101	50	9	9	31	1.66
956001--956043	17	2.4	19	80	7	54	30	4	0	65	1.13
958441--958481	19	2.2	19	95	0	73	26	24	14	34	1.94
963249--963286	18	2.1	18	90	9	60	31	2	10	55	1.48
973761--973821	2	31.0	2	78	3	61	45	0	50	3	1.17
973751--973785	18	1.9	18	88	0	52	54	0	28	17	1.43
973777--973831	16	3.3	17	82	10	69	38	0	61	0	0.96
973782--973849	22	3.2	21	77	6	66	35	1	63	0	1.04

Tables:   1   2   3   4

The End!