genome.fa.s2772.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002772.1 Hibiscus syriacus cultivar Beakdansim tig00005712_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  622842

Tables:   1   2   3   

This is table  2  of  3  ( 283 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
312438--312499	19	3.3	19	78	15	58	37	1	0	61	1.06
312952--313011	31	1.9	31	93	0	102	43	10	6	40	1.64
317817--317891	10	7.7	10	69	21	61	57	21	12	9	1.62
317821--317885	16	4.1	16	95	0	121	56	23	12	7	1.61
318636--318691	14	4.3	14	76	17	66	53	23	12	10	1.69
318616--318690	24	3.1	24	86	3	98	56	20	10	13	1.66
319658--319758	41	2.5	40	90	6	159	43	13	4	37	1.66
320490--320567	26	3.0	27	80	12	85	43	1	1	53	1.16
320521--320603	26	3.2	26	79	17	77	42	0	2	55	1.13
320469--320613	63	2.3	64	91	4	235	40	0	2	56	1.19
321130--321189	31	1.9	31	93	0	102	43	10	6	40	1.64
322009--322109	41	2.5	40	90	6	159	43	13	4	37	1.66
323777--323810	17	2.0	17	100	0	68	17	29	23	29	1.97
324951--325015	23	2.8	23	92	0	112	6	12	21	60	1.54
324931--325023	23	4.2	23	84	4	102	6	17	20	55	1.63
325928--326234	151	2.0	151	94	1	535	31	27	10	30	1.90
334738--335100	43	8.3	43	74	9	279	46	6	18	28	1.73
334760--335101	134	2.6	131	81	7	356	47	6	18	27	1.72
334964--335123	84	1.9	86	82	7	202	51	6	16	25	1.67
339503--339529	2	13.5	2	100	0	54	51	0	0	48	1.00
342272--342395	59	2.1	58	80	4	140	34	4	11	49	1.60
342285--342397	59	1.9	59	85	0	154	34	3	11	50	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
347494--347607	43	2.6	44	78	8	126	30	21	17	30	1.96
347748--347785	20	1.9	20	89	10	60	78	5	5	10	1.06
347902--347964	32	2.0	30	87	6	90	34	11	23	30	1.90
347902--347964	30	2.0	31	84	6	83	34	11	23	30	1.90
350892--350942	19	2.7	19	81	0	66	27	25	15	31	1.96
352654--352950	164	1.8	164	100	0	594	39	17	22	20	1.92
360147--360199	20	2.7	20	94	2	90	32	30	18	18	1.96
360082--360244	84	1.9	83	84	9	215	31	25	17	25	1.97
376523--376590	30	2.2	31	84	2	84	35	14	11	38	1.83
404083--404141	30	2.0	30	83	6	75	38	6	18	35	1.78
405098--405158	9	6.9	9	78	9	54	29	8	19	42	1.80
405101--405158	27	2.2	26	87	3	80	31	6	18	43	1.77
405098--405159	18	3.5	18	80	2	72	29	8	19	43	1.79
406284--406359	20	3.7	20	80	15	82	22	18	34	25	1.96
406401--406454	20	2.7	20	97	0	99	20	20	35	24	1.96
406304--406536	95	2.4	97	89	4	364	24	19	26	28	1.99
409120--409225	21	5.1	20	83	10	108	27	19	26	26	1.99
409123--409241	44	2.9	44	78	15	121	27	19	26	26	1.99
409168--409241	21	3.4	21	78	14	80	31	20	20	28	1.97
413171--413234	23	2.8	23	90	0	101	26	26	28	18	1.98
413242--413467	103	2.2	103	97	0	425	35	24	14	25	1.93
418967--419030	23	2.8	23	87	0	92	26	25	28	20	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
419030--419263	103	2.3	103	94	1	416	36	23	13	26	1.92
419998--420154	64	2.5	64	77	12	153	27	19	20	33	1.96
423418--423493	20	3.7	20	80	15	82	23	18	32	25	1.97
423418--423495	21	3.7	21	80	16	81	24	17	32	25	1.97
423410--423495	42	2.0	42	86	4	120	25	17	30	26	1.97
423455--423647	76	2.5	75	90	4	291	25	19	25	29	1.99
423508--423665	76	2.1	75	84	7	203	29	18	20	31	1.96
424383--424448	33	2.0	32	91	8	107	42	9	19	28	1.82
424530--424644	38	3.0	37	77	5	113	26	20	26	26	1.99
424742--424785	12	3.7	12	87	0	61	40	13	18	27	1.88
426344--426456	38	3.0	38	89	0	163	25	24	26	23	2.00
426560--426601	12	3.5	12	90	0	66	40	16	14	28	1.88
428166--428278	38	3.0	38	89	0	163	24	23	28	23	2.00
428382--428425	12	3.7	12	90	0	70	38	15	18	27	1.91
430922--430955	10	3.6	9	88	11	50	85	0	11	2	0.71
430922--430972	12	4.5	11	80	11	59	84	0	11	3	0.75
430921--430972	21	2.3	23	87	9	81	82	0	11	5	0.82
430921--430972	11	4.7	11	79	15	63	82	0	11	5	0.82
430977--431010	15	2.4	14	90	9	52	76	0	11	11	1.02
430979--431017	19	2.1	19	85	0	51	71	0	15	12	1.14
440379--440412	17	2.1	16	88	5	50	14	8	0	76	1.01
440878--440945	30	2.3	30	82	5	84	41	7	17	33	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
442169--442204	9	4.0	9	88	0	54	19	11	19	50	1.77
443233--443343	38	2.9	38	84	0	132	27	24	26	21	1.99
443447--443485	12	3.2	12	88	0	60	38	15	17	28	1.91
448892--448932	21	2.0	21	85	9	57	39	12	0	48	1.41
451210--451308	50	2.0	50	95	0	180	54	7	21	17	1.66
453043--453086	14	3.0	14	87	12	70	15	22	13	47	1.81
453043--453086	16	2.9	16	93	6	74	15	22	13	47	1.81
454843--454939	51	1.9	51	93	0	167	31	20	12	35	1.90
457174--457214	16	2.7	16	92	7	68	17	21	12	48	1.79
459835--459861	4	6.8	4	100	0	54	74	0	0	25	0.83
461791--461843	21	2.5	21	84	0	70	20	26	18	33	1.96
461833--461945	20	5.7	20	96	0	208	38	20	20	20	1.93
462142--462207	22	3.0	21	82	8	78	27	37	13	21	1.91
462558--462610	20	2.7	20	90	0	79	16	18	26	37	1.93
464500--464654	20	7.6	20	74	13	111	40	21	20	18	1.91
464699--464765	20	3.3	20	85	0	89	25	17	20	35	1.95
465276--465367	42	2.2	42	82	3	105	25	35	17	21	1.95
466899--466947	14	3.2	14	74	20	53	42	20	24	12	1.86
466879--466973	32	2.8	32	87	6	118	44	20	23	12	1.85
466984--467050	20	3.7	19	73	20	72	11	22	19	46	1.82
466988--467083	33	2.9	34	88	3	140	13	23	19	42	1.87
467057--467123	20	3.3	20	93	0	116	16	22	25	35	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
467108--467137	14	2.1	14	93	0	51	10	23	26	40	1.86
468002--468072	20	3.5	20	94	0	115	19	19	21	39	1.93
467959--468134	40	4.3	40	69	14	101	29	16	22	31	1.96
468069--468114	21	2.2	21	84	0	56	39	15	23	21	1.92
468853--468929	24	3.1	24	68	15	66	53	6	0	40	1.27
471548--471572	12	2.1	12	100	0	50	48	12	24	16	1.79
471790--471907	35	3.3	35	82	4	146	33	3	17	44	1.66
476406--476469	21	3.4	20	66	29	59	31	4	18	45	1.70
476398--476519	35	3.4	36	86	6	167	32	5	18	42	1.74
496387--496415	6	4.8	6	100	0	58	17	34	31	17	1.93
497412--497450	19	2.0	20	90	10	62	61	5	5	28	1.39
498282--498345	29	2.2	29	100	0	128	29	0	20	50	1.49
499858--500023	61	2.8	60	81	5	176	40	15	12	32	1.83
501728--501785	22	2.6	22	94	2	98	39	32	10	17	1.83
505304--505365	32	2.0	32	93	3	108	14	16	8	61	1.55
507301--507342	20	2.2	20	87	8	61	66	9	21	2	1.32
507298--507392	11	8.6	11	72	16	72	70	9	17	2	1.24
508510--508551	4	11.0	4	85	10	61	47	26	2	23	1.64
508506--508551	14	3.1	14	88	11	74	47	26	2	23	1.63
509014--509252	105	2.3	102	82	7	279	31	19	11	37	1.88
509198--509317	36	3.4	36	79	6	113	30	20	12	35	1.90
509570--509725	28	5.6	28	93	3	244	30	10	14	44	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
509570--509725	57	2.8	56	90	4	244	30	10	14	44	1.80
509736--509835	52	1.9	53	91	6	168	34	13	15	38	1.85
509826--509889	30	2.1	30	94	0	110	35	9	14	40	1.78
510908--510989	28	2.9	28	83	3	94	24	12	13	50	1.76
511018--511346	40	7.7	40	69	17	160	24	31	19	24	1.98
511008--511168	83	1.9	83	85	7	223	24	31	19	23	1.98
511018--511428	134	3.1	131	88	3	567	24	31	18	24	1.98
511825--511882	22	2.6	22	94	2	98	39	32	10	17	1.83
514952--515119	60	2.8	59	81	4	176	32	19	5	43	1.73
516545--516590	24	2.0	23	87	8	67	50	0	0	50	1.00

Tables:   1   2   3