Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002772.1 Hibiscus syriacus cultivar Beakdansim tig00005712_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  622842

Tables:   1   2   3   

This is table  3  of  3  ( 283 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
517902--517933
2
16.0
2
100
0
64
50
0
0
50
1.00
520658--520691
16
2.1
16
100
0
68
23
26
38
11
1.89
523600--523627
11
2.5
11
100
0
56
67
10
7
14
1.40
523619--523668
23
2.2
23
86
10
68
52
12
18
18
1.75
526608--526688
26
3.0
28
73
22
84
41
1
8
48
1.42
526895--526969
21
3.6
21
81
0
87
24
22
20
33
1.97
526963--527065
21
4.9
21
95
0
161
19
27
23
30
1.98
527744--527832
21
4.2
21
86
0
115
31
21
22
24
1.98
527828--527884
21
2.7
21
80
0
69
29
19
21
29
1.97
531735--531789
21
2.6
21
85
0
83
34
10
27
27
1.90
534362--534414
24
2.1
24
86
10
70
26
11
30
32
1.91
543246--543306
29
2.1
30
81
9
72
54
14
14
16
1.72
544925--544972
21
2.2
22
77
7
53
56
18
16
8
1.65
544932--544971
21
1.9
21
89
0
62
52
17
20
10
1.72
553018--553168
29
5.1
28
80
12
135
41
20
5
33
1.75
560291--560353
29
2.2
29
88
0
90
42
22
4
30
1.74
560311--560440
59
2.2
58
83
5
163
42
20
2
34
1.65
560312--560440
29
4.4
29
82
5
136
42
20
2
34
1.65
567174--567216
6
6.8
6
82
10
50
34
0
65
0
0.93
567180--567212
14
2.4
14
94
0
57
33
0
66
0
0.92
567171--567216
20
2.3
20
88
0
74
36
0
63
0
0.95
567301--567384
45
2.0
42
86
13
120
50
11
17
20
1.78
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
572269--572295
2
13.5
2
100
0
54
0
51
0
48
1.00
574040--574084
23
2.0
23
82
8
56
46
2
6
44
1.42
575542--575617
37
2.1
36
81
11
86
43
17
10
28
1.82
579018--579049
2
16.0
2
100
0
64
50
0
0
50
1.00
579059--579092
8
4.2
8
92
0
59
58
0
2
38
1.13
592517--592568
28
1.9
26
84
7
68
69
1
23
5
1.20
592517--592564
12
3.8
12
80
8
51
72
2
20
4
1.11
593565--594360
55
14.5
55
95
0
1398
28
15
27
28
1.96
594370--594492
61
2.0
61
95
0
219
26
13
27
32
1.94
594741--594770
2
15.0
2
100
0
60
50
0
0
50
1.00
594780--594813
8
4.2
8
92
0
59
58
0
2
38
1.13
600995--601030
18
2.0
18
100
0
72
33
33
11
22
1.89
600998--601039
18
2.3
18
88
8
59
40
30
9
19
1.83
603479--603505
11
2.5
11
100
0
54
29
29
0
40
1.57
604086--604120
15
2.4
14
90
4
52
77
0
11
11
1.00
604329--604372
22
2.0
21
86
4
61
63
0
6
29
1.20
604329--604367
19
2.0
21
90
10
64
66
0
5
28
1.12
606361--607031
211
3.2
210
94
1
1112
22
19
25
32
1.98
606361--607033
316
2.1
317
93
0
1152
22
19
25
32
1.98
606361--607033
105
6.4
106
93
1
1077
22
19
25
32
1.98
622202--622266
2
33.0
2
96
3
123
49
0
0
50
1.00

Tables:   1   2   3

The End!