genome.fa.s3345.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003345.1 Hibiscus syriacus cultivar Beakdansim tig00007043_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  605145

Tables:   1   2   3   

This is table  2  of  3  ( 359 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
215364--215448	34	2.5	34	94	0	143	40	0	1	58	1.05
215382--215436	25	2.2	25	80	6	67	38	0	0	61	0.96
217073--217327	6	42.5	6	96	0	321	33	7	32	26	1.83
220610--220845	101	2.3	101	97	0	436	32	15	12	39	1.85
221193--221219	2	13.5	2	100	0	54	51	0	48	0	1.00
226838--226862	13	1.9	13	100	0	50	40	0	12	48	1.40
226864--226900	19	2.1	18	90	10	58	37	10	5	45	1.62
229046--229070	12	2.1	12	100	0	50	52	8	0	40	1.31
232048--232112	19	3.4	19	79	8	71	44	1	1	52	1.19
235719--235770	2	27.0	2	88	7	81	48	0	0	51	1.00
237132--237296	54	3.1	54	87	1	235	37	16	16	29	1.91
243270--243334	20	3.2	19	75	12	67	32	26	12	29	1.92
243800--243846	20	2.3	20	85	0	67	31	12	21	34	1.91
244496--244668	60	2.9	60	84	1	204	31	17	4	45	1.69
246335--246380	22	2.0	23	87	4	67	52	2	0	45	1.13
248062--248108	22	2.2	20	82	10	58	46	4	0	48	1.21
248098--248126	2	15.0	2	92	7	51	48	0	0	51	1.00
252308--252445	60	2.3	58	74	8	134	34	21	4	39	1.73
253773--253801	3	9.7	3	100	0	58	68	0	0	31	0.89
254159--254184	3	8.7	3	100	0	52	0	30	0	69	0.89
261464--261650	27	6.9	27	86	0	230	28	26	9	35	1.88
271611--271643	17	1.9	17	88	11	50	24	48	3	24	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
280699--281545	231	3.7	231	88	2	1172	42	15	12	29	1.84
281999--282059	30	2.0	30	81	12	72	19	8	14	57	1.62
282122--282217	24	4.0	24	80	6	97	30	10	13	45	1.77
282439--282484	24	1.9	24	82	8	58	41	17	17	23	1.90
282710--282790	34	2.4	34	87	2	110	46	6	6	40	1.54
285156--285233	39	2.0	39	100	0	156	20	28	15	35	1.93
289948--290010	14	4.6	14	74	18	53	49	0	0	50	1.00
289969--290013	14	3.3	14	87	3	65	44	0	0	55	0.99
290144--290187	22	2.0	22	100	0	88	36	9	13	40	1.76
296377--296500	60	2.1	60	82	0	149	33	12	16	37	1.86
298895--298978	3	28.3	3	95	2	152	34	1	0	64	1.02
298977--299011	14	2.4	15	85	4	54	60	2	0	37	1.12
311787--311833	7	6.7	7	79	15	53	85	0	14	0	0.61
311790--311834	8	5.9	8	82	12	51	84	0	15	0	0.62
311787--311834	13	3.4	14	83	13	55	85	0	14	0	0.60
311786--311836	21	2.5	20	87	6	75	84	0	15	0	0.63
312148--312192	16	2.8	16	83	10	56	28	8	6	55	1.56
312943--313653	83	8.6	83	93	3	1157	27	13	21	37	1.91
314307--315059	113	6.6	113	91	2	1055	37	13	19	29	1.90
314307--315059	227	3.3	226	89	2	1091	37	13	19	29	1.90
314307--315059	340	2.2	338	87	3	1057	37	13	19	29	1.90
315197--315314	3	39.3	3	98	0	209	33	2	0	63	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
315313--315347	14	2.4	15	85	4	54	60	2	0	37	1.12
315798--315835	19	2.0	19	100	0	76	78	5	15	0	0.91
318276--318332	28	2.0	28	83	6	71	45	5	0	49	1.24
320689--320778	2	45.0	2	95	0	153	47	0	3	48	1.18
321864--321931	30	2.2	30	86	2	91	44	4	5	45	1.48
321881--321969	30	2.9	31	88	1	126	43	3	6	46	1.46
321888--321969	31	2.7	30	86	1	110	43	3	7	45	1.49
326675--326707	15	2.1	16	94	5	59	54	0	0	45	0.99
328379--328490	59	1.9	59	94	3	199	27	25	7	39	1.82
333710--333741	11	2.9	11	100	0	64	0	28	56	15	1.40
333894--333944	12	4.5	11	80	7	57	15	15	43	25	1.86
333894--333927	11	2.9	12	86	4	52	11	14	44	29	1.81
333894--333944	23	2.2	23	82	6	59	15	15	43	25	1.86
333943--334006	24	2.6	24	78	7	67	45	0	1	53	1.10
334037--334073	12	3.0	12	92	4	56	10	16	54	18	1.71
339839--339877	18	2.2	18	100	0	78	33	17	20	28	1.96
340415--340475	31	1.9	32	90	3	97	32	1	6	59	1.33
347681--347802	3	40.3	3	88	1	181	33	1	2	62	1.18
348509--348537	13	2.2	13	100	0	58	0	31	62	6	1.22
349079--349114	19	1.9	19	94	5	65	22	0	5	72	1.05
349879--349920	18	2.4	17	88	11	59	28	0	2	69	1.01
360521--360573	7	7.7	7	83	12	65	83	0	13	3	0.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
360509--360573	20	3.2	20	80	12	78	81	0	15	3	0.81
361691--362237	52	10.7	51	96	1	992	24	14	23	37	1.92
361691--362256	102	5.5	102	95	2	987	25	14	23	36	1.93
361691--362256	206	2.8	205	96	2	1025	25	14	23	36	1.93
362874--363541	114	5.9	114	97	0	1216	36	14	19	29	1.91
363787--363917	3	43.3	3	89	1	199	33	1	2	62	1.17
365182--365217	19	1.9	19	94	5	65	22	0	5	72	1.05
370620--370716	20	5.1	20	80	8	121	26	29	20	22	1.99
370620--370713	38	2.5	38	87	3	136	26	30	20	22	1.98
371141--371171	2	15.0	2	93	6	53	48	3	0	48	1.17
371806--371843	20	1.9	20	88	0	58	28	18	18	34	1.95
371851--372007	64	2.4	63	80	7	163	26	22	18	32	1.97
379346--379446	45	2.2	45	100	0	202	35	16	17	29	1.93
387893--387931	18	2.0	18	85	14	51	46	0	0	53	1.00
387957--388010	27	2.1	25	86	6	72	44	3	0	51	1.19
388013--388056	18	2.6	16	82	10	61	31	2	2	63	1.19
387996--388051	26	2.2	26	81	12	62	32	1	1	64	1.14
388698--388746	24	2.1	24	92	3	82	42	18	18	20	1.89
388701--388753	24	2.3	23	86	3	70	43	16	20	18	1.88
388747--388845	23	4.3	23	90	0	153	33	24	27	15	1.95
390307--390379	3	24.3	3	100	0	146	34	0	0	65	0.93
395092--395368	40	6.8	40	74	4	187	29	21	17	31	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
398405--398665	43	6.1	43	76	1	229	39	20	17	23	1.92
398415--398706	129	2.3	127	86	3	372	37	21	17	23	1.94
406562--406619	29	2.0	29	86	3	80	41	10	18	29	1.84
408268--408352	32	2.7	31	87	10	120	16	20	10	52	1.72
413353--413412	29	2.2	27	85	11	86	43	10	5	41	1.60
415041--415076	17	2.2	17	90	5	56	52	0	2	44	1.15
415874--415935	3	21.0	3	83	9	83	33	0	1	64	1.03
417043--417080	8	4.8	8	81	12	51	13	2	0	84	0.73
420698--420856	65	2.4	66	87	3	223	38	25	12	23	1.90
421143--421315	65	2.7	63	86	4	235	39	20	13	27	1.89
421451--421658	86	2.4	86	88	4	296	35	19	18	25	1.95
421980--422013	17	2.0	17	88	11	52	29	26	11	32	1.92
423660--423719	14	4.4	14	80	16	72	16	3	0	80	0.85
423730--423779	9	5.6	9	88	11	52	24	6	2	68	1.23
423740--423788	3	16.7	3	76	19	50	30	4	0	65	1.11
424544--424616	27	2.7	27	77	10	76	36	4	4	54	1.38
428458--428510	2	26.5	2	100	0	106	0	49	0	50	1.00
431499--431543	23	2.0	22	83	8	56	11	17	17	53	1.72
433045--433089	17	2.6	17	78	0	54	20	11	0	68	1.19
433169--433227	22	2.7	20	77	15	55	15	5	3	76	1.10
436418--436548	60	2.2	60	77	11	135	40	12	9	37	1.76
451452--451507	29	1.9	29	85	7	78	33	16	3	46	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
452420--452470	3	17.0	3	78	15	52	1	27	1	68	1.11
452420--452479	21	2.8	20	82	9	75	1	25	3	70	1.12
452433--452479	12	3.7	12	83	13	58	0	25	2	72	0.96
453018--453160	71	2.0	71	88	0	214	31	20	14	32	1.93
455007--455059	24	2.2	24	100	0	106	16	22	35	24	1.95
458063--458103	12	3.1	13	80	19	57	46	14	17	21	1.84
458057--458102	12	3.6	12	81	16	56	45	17	19	17	1.85
460346--460385	21	1.9	21	94	0	71	30	15	7	47	1.72
460380--460478	33	3.0	33	94	1	164	32	7	15	45	1.73
460464--460518	13	4.2	13	75	13	58	34	3	12	49	1.59

Tables:   1   2   3