genome.fa.s3345.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003345.1 Hibiscus syriacus cultivar Beakdansim tig00007043_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  605145

Tables:   1   2   3   

This is table  3  of  3  ( 359 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
460915--460970	15	3.6	15	81	9	67	28	12	12	46	1.78
460917--460963	17	2.9	17	84	6	62	27	10	12	48	1.74
460925--460970	17	2.9	15	78	15	56	26	13	10	50	1.74
460934--460967	18	1.9	18	94	5	61	32	11	11	44	1.77
461061--461092	16	2.0	17	88	11	50	43	21	21	12	1.86
461124--461274	55	2.7	55	84	2	196	34	23	22	19	1.97
466429--466479	23	2.2	23	82	6	59	37	13	1	47	1.55
466853--466943	19	4.4	20	75	17	96	30	29	5	34	1.80
466864--466945	44	1.9	41	85	7	110	32	30	6	30	1.82
467479--467530	26	2.0	26	85	7	70	48	1	3	46	1.31
468486--468537	21	2.5	21	81	3	61	38	19	25	17	1.93
468526--468660	20	6.7	20	81	4	128	33	23	18	24	1.97
468505--468654	61	2.5	61	83	2	176	34	23	19	22	1.96
468526--468619	41	2.3	40	83	1	107	34	23	19	23	1.97
468836--468879	22	2.0	22	95	0	79	20	45	15	18	1.85
469141--469178	20	1.9	20	88	0	58	13	15	21	50	1.78
469315--469369	25	2.2	24	78	15	58	20	9	18	52	1.71
470498--470539	18	2.3	18	87	0	66	26	45	16	11	1.82
471008--471074	20	3.4	20	81	2	73	38	23	22	14	1.92
471063--471120	14	3.9	14	79	16	71	48	24	17	10	1.78
471047--471136	32	2.8	32	93	3	144	46	23	18	11	1.81
471078--471136	18	3.4	18	73	23	56	47	23	18	10	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
471132--471195	19	3.6	19	74	20	75	12	20	21	45	1.84
471180--471234	20	2.8	19	83	8	65	16	23	23	36	1.94
473021--473046	8	3.2	8	100	0	52	23	11	11	53	1.69
473093--473128	14	2.6	14	90	0	54	30	0	22	47	1.52
473211--473249	20	2.0	20	94	0	69	46	30	10	12	1.75
473255--473319	19	3.7	19	84	15	95	46	18	21	13	1.84
473345--473394	20	2.5	20	96	3	93	16	24	28	32	1.96
473607--473657	20	2.5	20	100	0	102	19	31	19	29	1.97
474402--474455	24	2.2	24	90	0	81	22	16	20	40	1.91
476927--477057	19	7.7	19	66	23	94	42	19	22	14	1.88
476927--477053	33	3.8	33	88	4	202	42	19	22	14	1.88
476928--477060	66	2.0	66	97	0	248	41	19	22	16	1.90
477068--477124	14	3.7	14	75	20	60	8	22	22	45	1.80
477082--477142	19	3.5	19	70	21	60	11	21	21	45	1.82
477053--477142	33	2.7	33	91	0	144	13	21	21	44	1.85
477249--477285	14	2.6	14	91	0	65	45	24	0	29	1.53
478660--478770	21	5.3	21	68	8	55	22	19	32	25	1.98
478640--478845	42	4.9	41	73	9	164	23	17	36	22	1.95
478670--478845	84	2.1	84	97	0	334	23	17	37	21	1.94
479062--479247	90	2.0	90	92	5	311	46	19	12	21	1.82
479414--479607	63	3.1	62	96	1	343	23	36	18	21	1.95
481068--481190	19	7.0	19	75	17	122	43	21	23	11	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
481071--481135	33	2.0	33	93	0	112	41	23	24	10	1.86
481068--481190	52	2.4	52	94	0	210	43	21	23	11	1.84
481806--481859	20	2.7	20	97	0	99	25	18	24	31	1.97
482796--482864	29	2.4	29	97	0	129	50	8	10	30	1.66
507259--507286	2	14.0	2	100	0	56	50	0	0	50	1.00
511041--511081	20	2.0	20	90	0	64	51	0	2	46	1.14
511818--511876	29	2.0	30	86	3	84	44	6	8	40	1.61
513146--513212	31	2.2	31	91	5	109	20	28	14	35	1.93
516769--516801	17	1.9	17	88	11	50	30	21	12	36	1.90
521068--521143	23	3.4	23	83	8	95	64	15	7	11	1.48
530352--530404	26	2.0	27	88	7	81	13	11	7	67	1.40
538474--538527	23	2.4	22	84	9	72	24	20	33	22	1.97
538464--538540	22	3.5	21	75	16	68	23	24	25	25	2.00
547801--547864	30	2.1	30	94	0	110	31	17	7	43	1.77
547941--547976	6	6.0	6	93	0	54	44	0	5	50	1.25
549077--549266	40	4.8	40	82	7	183	40	23	15	21	1.91
549098--549266	60	2.8	60	84	7	218	40	24	14	20	1.90
549212--549264	19	2.7	19	91	5	79	35	24	13	26	1.92
549077--549270	20	9.7	20	76	11	150	40	23	15	21	1.91
549212--549284	19	3.7	20	85	7	69	38	23	10	27	1.88
549440--549476	16	2.4	16	86	8	51	29	5	0	64	1.15
550218--550296	24	3.3	24	85	1	106	24	15	17	43	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
552554--552589	18	2.0	18	94	0	63	55	25	2	16	1.55
552929--552982	20	2.7	20	85	0	72	22	18	20	38	1.93
552991--553034	20	2.1	22	91	8	74	18	22	18	40	1.91
553094--553143	25	2.0	25	96	0	91	26	8	22	44	1.80
553529--553565	18	2.1	18	89	0	56	32	5	10	51	1.60
553521--553573	24	2.2	24	86	0	70	35	3	13	47	1.61
554419--554451	13	2.5	13	100	0	66	21	9	18	51	1.73
554677--554787	51	2.2	51	93	3	188	54	17	1	27	1.53
556170--556268	21	4.7	21	72	8	85	22	20	33	24	1.97
556150--556243	42	2.2	42	85	7	120	19	21	36	23	1.95
556165--556268	42	2.5	42	80	10	122	22	19	34	24	1.96
558491--558530	20	2.0	20	85	0	53	15	12	22	50	1.77
559001--559172	40	4.3	40	79	12	185	20	18	24	36	1.95
559001--559172	60	2.9	60	88	5	224	20	18	24	36	1.95
559001--559139	20	6.9	20	82	9	185	20	18	24	36	1.95
559000--559171	20	8.6	20	77	17	112	19	18	24	37	1.94
563789--563837	20	2.4	19	77	12	53	24	6	2	67	1.24
564202--564275	20	3.7	20	75	8	69	35	28	18	17	1.94
564242--564497	20	12.6	20	77	9	180	38	24	18	17	1.93
564263--564497	40	5.8	40	82	5	240	38	25	18	17	1.92
564242--564497	81	3.2	81	81	5	295	38	24	18	17	1.93
564263--564491	121	1.9	121	91	0	377	39	24	17	17	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
565058--565135	20	3.8	19	80	6	75	53	17	17	10	1.71
565073--565133	21	3.0	21	80	7	72	50	19	19	9	1.75
565147--565268	33	3.5	33	77	8	127	13	22	18	46	1.82
565213--565268	20	2.8	21	83	8	71	12	23	17	46	1.82
567290--567356	21	3.2	21	66	6	55	23	35	20	19	1.95
567238--567356	42	2.8	42	81	5	107	22	36	18	22	1.95
568701--568753	14	3.9	13	76	9	52	33	0	18	47	1.49
568841--568885	19	2.3	20	92	3	74	44	20	22	13	1.85
571166--571219	24	2.2	24	93	0	90	40	20	18	20	1.91
571166--571233	24	2.8	24	84	0	64	38	20	17	23	1.93
572079--572270	20	9.6	19	77	12	161	20	18	22	38	1.94
572076--572289	40	5.3	40	86	0	284	20	19	22	37	1.94
573717--574394	200	3.4	198	85	4	839	31	14	14	39	1.86
577859--577884	2	13.0	2	100	0	52	50	0	0	50	1.00
579051--579085	15	2.3	15	90	0	52	74	0	0	25	0.82
579691--579745	25	2.2	25	83	0	65	61	1	10	25	1.39
582216--582341	48	2.6	48	86	2	155	25	19	18	37	1.94
582254--582355	48	2.1	48	85	0	132	27	20	17	34	1.95
582296--582541	114	2.1	114	94	0	429	25	21	21	31	1.98
586627--586694	35	1.9	35	85	5	93	27	23	17	30	1.97
589579--589634	19	3.2	18	79	18	64	33	0	0	66	0.92
589633--589736	3	34.7	3	92	0	172	62	0	2	34	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
589990--590986	113	8.8	113	94	0	1631	28	19	13	37	1.90
591604--592029	82	5.2	82	93	2	694	35	21	13	29	1.91
591602--592029	165	2.6	165	92	2	709	35	21	13	29	1.92
593150--593216	17	3.9	16	84	13	80	1	13	0	85	0.68
593150--593215	28	2.4	27	87	2	87	1	13	0	84	0.68
593157--593218	9	6.8	10	78	15	64	1	14	0	83	0.71
596728--596759	11	3.1	11	91	8	50	65	0	15	18	1.27
604500--604548	19	2.7	17	82	14	62	73	2	0	24	0.94
604507--604553	19	2.4	19	89	3	67	74	4	0	21	0.99

Tables:   1   2   3

The End!